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研究生: 陳寧容
Chen, Ning-Jung
論文名稱: 系綜繞射顯微成像技術
Ensemble Diffraction Microscopy
指導教授: 陳健群
Chen, Chien-Chun
口試委員: 蘇紘儀
Su, Hong-Yi
謝達斌
Shieh, Dar-Bin
黃玉山
Huang, Yu-Shan
陳祺
Chen, Chi
學位類別: 博士
Doctor
系所名稱: 原子科學院 - 工程與系統科學系
Department of Engineering and System Science
論文出版年: 2024
畢業學年度: 113
語文別: 中文
論文頁數: 57
中文關鍵詞: 繞射顯微成像技術系綜相位取回演算法生物巨分子X光電子顯微鏡
外文關鍵詞: X-ray diffraction microscopy, Ensemble, Phase retrieval algorithms, Bio-macromolecule, X-ray, Transmission electron microscope
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  • 同調光繞射顯微術(Coherent Diffraction Microscopy, CDM)是一種在理論上不需透過結晶的情況下以原子尺度解析度來呈現材料細微結構的成像方法,對於生物成像學來說具有極大的優勢。然而以生物巨分子、輕元素組成或者尺寸小於100奈米的目標物作為樣品時,由於缺乏高角度的散射訊號,CDM實際所能達到的解析度受限於數奈米。另一方面,小角度散射(Small-Angle X-ray Scattering, SAXS)則能夠通過擬合一維的繞射訊號來比對出樣品的高解析度三維結構。然而需要大量的資料庫來做為比對依據以及非唯一解使得SAXS有著多重的限制。為了突破繞射成像學的瓶頸,我們提出系綜繞射顯微術(Ensemble Diffraction Microscopy ,EDM)來提升現今繞射成像的解析度。藉由台灣光子源的完全及部分相干的X光源,從450奈米左右的標準樣品到60奈米的一般性材料以及20奈米類病毒生物奈米樣品,EDM被證實了可被應用在廣泛的光源種類以及各種樣品上。為了將EDM實際應用在生物成像,我們更結合電場控制以及生物表面修飾技術,提供了一個全新的成像方法學。


    Coherent Diffraction Microscopy (CDM) is an imaging technique that, in theory, allows for atomic-scale resolution of material structures without the need for crystallization. It holds great potential for the field of biological imaging. However, when dealing with biomacromolecule, light elements composed or even the size of sample is smaller than 100 nm, the lack of high-angle scattering signal limits the achievable resolution of CDM to a few nanometers. On the other hand, Small-Angle X-ray Scattering (SAXS) can provide high-resolution 3D structural information of samples by fitting one-dimensional diffraction signals. However, SAXS faces the limitations such as the need for extensive databases for comparison and non-unique solutions. To overcome the challenges of applying diffraction microscopy, we propose Ensemble Diffraction Microscopy (EDM) to break through the resolution of current diffraction imaging techniques. Using both totally and partially coherent X-ray sources at Taiwan Photon Source, EDM has been demonstrated to be applicable to various light sources and samples; from standard samples of around 450 nanometers to general materials of 60 nanometers and virus-like-particles of 20 nanometers. Furthermore, to implement EDM in biological imaging, we combine electric field control with surface modification techniques, providing a novel methodology for diffraction imaging.

    摘要 I ABSTRACT II 誌謝 III 目錄 1 圖目錄 4 第一章、 緒論 7 1.1. 研究動機 7 第二章、 研究背景:繞射顯微技術 8 2.1 X光繞射結晶學 8 2.2 弗朗和斐(Fraunhofer)繞射與傅立葉轉換 9 2.3 同調光繞射顯微術(Coherent diffraction microscopy, CDM)[4] 10 2.4 相位還原演算法 11 2.5 傅立葉球殼相關係數(Fourier Shell correlation, FSC) 12 2.6 相位重建轉換函數(Phase retrieval transfer function ,PRTF) 13 2.7 CDM瓶頸 13 第三章、 EDM研究原理與實驗設計 15 3.1 EDM原理推導 15 3.2 EDM實驗設計與步驟 17 3.2.1 樣品設計 17 3.2.2 實驗步驟 19 第四章、 研究結果(一) 20 4.1 實驗數據前處理 20 4.2 藉由相位還原演算法重建影像 21 4.3 結果比較與討論 22 4.3.1 由繞射圖所計算得到之像素解析度(pixel resolution) 22 4.3.2 由FSC探討藉由EDM作法提升SNR之差異 23 4.3.3 EDM與其他X光繞射顯影技術的比較 24 第五章、 結論(一) 25 第六章、 將EDM應用於更小尺寸的樣品:實驗設計(二) 26 6.1 藉由EDM成像60 nm大小的無機樣品 26 6.1.1 樣品與實驗步驟 26 6.1.2 實驗結果 27 6.1.3 結果分析比較與討論 27 6.2 藉由EDM成像19 nm大小的有機類生物樣品 31 6.2.1 樣品 31 6.2.2 實驗步驟 32 6.2.3 結果分析比較與討論 34 第七章、 結論(二) 37 第八章、 生物巨分子方向控制:研究原理 39 8.1 蛋白質表面修飾技術 39 8.2 電場與蛋白質之間的關係 40 8.3 藉由雷射與偏振片初步確認蛋白質之排列方向 41 第九章、 生物巨分子方向控制:實驗設計(三) 42 9.1 蛋白質表面修飾技術實驗 42 9.2 雷射激發螢光方向檢測實驗 44 9.2.1 待測樣品特性 44 9.2.2 雷射光路實驗架設 45 第十章、 研究結果(三) 47 10.1 蛋白質鏈接波長量測結果 47 10.2 雷射激發螢光方向檢測實驗結果 48 第十一章、 電子顯微鏡相關應用 49 11.1 藉由表面修飾技術應用在TEM試片 49 11.2 利用石墨烯對生物巨分子的親和力製作TEM試片 52 第十二章、 結論及未來發展 54 第十三章、 參考文獻 55  

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