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研究生: 連慧雯
Lien, Huei-Wen
論文名稱: 利用核磁共振技術探討人類鈣離子結合之 S100A5突變蛋白(C43S/C80S)水溶液結構以及其與RAGE-V蛋白之間的交互作用
NMR Structure of Calcium-bound mutant S100A5(C43S/C80S) and its Interaction with RAGE V domain
指導教授: 余靖
Yu, Chin
口試委員: 洪嘉呈
莊偉哲
學位類別: 碩士
Master
系所名稱: 理學院 - 化學系
Department of Chemistry
論文出版年: 2013
畢業學年度: 101
語文別: 中文
論文頁數: 81
中文關鍵詞: S100A5蛋白質RAGE蛋白質核磁共振
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  • 人類S100A5蛋白是S100蛋白質家族之一份子,這系列蛋白質結構具有高度相似性:皆具有EF-hand motif且會與鈣離子結合。在S100的眾多配體(ligand)中,其中RAGE(Receptor for Advanced Glycation Endproducts) 蛋白在近年來引起許多科學家的關注。RAGE是一種類免疫球蛋白,其與發炎現象、糖尿病等疾病相關。RAGE具有多樣化的配體,它們分別會與RAGE位於細胞外的不同部分反應,來誘導細胞產生訊息傳遞現象。近期研究中,科學家利用表面電漿共振指出,S100A5蛋白會與RAGE細胞外其中一部分(V domain)反應。
    在本篇論文中,我們希望更進一步了解S100A5與RAGE-V之間的反應,以及研究所形成之複合物。為了不破壞RAGE-V之結構,我們將wild-type S100A5進行Cys-->Ser之突變(C43S/C80S,簡稱mS100A5),利用三維核磁共振實驗及軟體計算解出突變S100A5之三維結構後,以二維核磁共振滴定之方法,找出mS100A5與RAGE-V作用位置;另外結合恆溫滴定熱卡計、螢光等數據,來推測mS100A5與RAGE-V之結合比例與解離常數。而從實驗結果歸納出,mS100A5與RAGE-V以1:1之比例結合形成複合物,而其解離常數為 μM等級。本研究幫助我們更了解S100家族與RAGE-V反應之情形,然而後續仍需更多延伸之研究來分析這個反應,與探討此反應是否與實際生理情形相關。


    目錄 i 謝誌 v 摘要 vi 圖目錄 viii 表目錄 xi 縮寫表 xii 第一章 前言 1-1 S100蛋白家族介紹與S100A5之特性及結構1 1-2 RAGE-V之特性及結構4 1-3 S100蛋白誘發的RAGE訊息傳遞7 1-5 生物核磁共振技術介紹12 1-6 蛋白質分子的NMR光譜循序判定13 1-6.1 蛋白質分子的骨架循序判定13 1-6.2 蛋白質分子的支鏈循序判定14 1-7 限制條件的找尋15 1-7.1 距離限制條件15 1-7.2 雙面角限制條件16 1-7.3 氫鍵限制條件17 1-7.4 結構計算17 1-8 HADDOCK介紹18 第二章 材料與方法 2-1 mS100A5蛋白質之取得21 2-1.1 蛋白質之表現21 2-1.2 mS100A5蛋白質之純化23 2-1.3 RAGE-V蛋白之取得與表現26 2-1.4 RAGE-V 蛋白之純化26 2-1.5 mS100A5與RAGE-V之濃度測定29 2-2 蛋白質之基本性質鑑定30 2-2.1 蛋白質質量鑑定30 2-2.2 螢光放射光譜(Fluorescence spectrum)31 2-2.3 恆溫滴定熱卡計實驗33 2-2.4 核磁共振實驗36 2-2.5 分析級超高速離心實驗37 第三章 結果與討論 3-1 mS100A5蛋白質在大腸桿菌之表現38 3-1.1 異丙基硫化半乳糖(IPTG)對大腸桿菌之誘導作用38 3-1.2 大量表現mS100A5蛋白質39 3-1.3 mS100A5蛋白質之純化40 3-1.4 RAGE-V蛋白質之純化42 3-2 mS100A5及RAGE-V蛋白質之基本性質鑑定43 3-2.1 mS100A5與RAGE-V蛋白質之分子量鑑定43 3-3 mS100A5之同位素標定實驗-2D HSQC44 3-3.1 mS100A5之同位素標定實驗-分析三維核磁共振光譜46 3-3.2 mS100A5之結構計算-前置作業49 3-3.3 mS100A5之結構計算54 3-3.4 mS100A5 與S100A5結構比較58 3-3.5 mS100A5 結構分析資訊59 3-4 RAGE-V之同位素標定實驗(HSQC)60 3-5 mS100A5與RAGE-V交互作用之探討61 3-5.1 HSQC titration分析61 3-5.2 ITC分析67 3-5.3 螢光分析68 3-5.4 分析級超高速離心方法70 3-6 利用HADDOCK預測複合物結構73 結論74 參考文獻78 附錄74

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