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研究生: 蔡昀家
論文名稱: 探討人類EGF蛋白質水溶液結構 以及其與鈣離子結合S100A4蛋白之間的交互作用
NMR Structure of EGF and its Interaction with Calcium-bound S100A4
指導教授: 余靖
口試委員: 莊偉哲
陳金榜
學位類別: 碩士
Master
系所名稱: 理學院 - 化學系
Department of Chemistry
論文出版年: 2013
畢業學年度: 101
語文別: 中文
論文頁數: 91
中文關鍵詞: 核磁共振生長因子蛋白蛋白質結構
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  • 人類S100A4蛋白質為S100蛋白質家族一份子,這個蛋白質家族在結構上具有高度相似性,它們皆具有EF-hand motif且會與鈣離子結合,在與鈣離子結合後會改變其構型並與目標蛋白交互作用,而EGF蛋白為其中一種會與S100A4結合的目標蛋白。人類表皮生長因子( EGF )可促使多種生物細胞( 包括腫瘤細胞 )的增生分化,而此生物活性是透過EGF蛋白與細胞膜表面上的特定受體( EGFR )結合進而誘導產生一系列訊息傳導所致。在近期的研究中,科學家利用西方點墨法指出S100A4蛋白會與EGF蛋白作反應。
    在本篇論文中,我們希望更進一步了解S100A4與EGF蛋白之間的反應,以及研究所形成之複合物。為了配合S100A4在水溶液條件中的最佳狀態,我們將EGF蛋白溶於PH6.0的溶液中,再利用三維核磁共振實驗及軟體計算解出EGF蛋白在PH6.0之三維結構後,以二維核磁共振滴定之方法,找出S100A4與EGF蛋白作用位置;另外結合恆溫滴定熱卡計、螢光等數據,來推測S100A4與EGF蛋白之結合比例與解離常數。而從實驗結果推測出,S100A4與EGF蛋白大概以1:1之比例結合形成複合物,而其解離常數為 μM等級。本研究幫助我們更了解S100A4與EGF蛋白反應之情形,而仍需更多延伸研究來分析這個反應,探討此反應是否與實際生理情形相關。


    Human S100A4 protein belongs to S100 protein family which shares structure similarities with each other: they all have EF-hand motifs and could bind calcium. When S100A4 binds with calcium, it will change its conformation and interact with their target protein. Human epidermal growth factor ( EGF ) is the target protein which is also one of the high affinity ligands of EGFR. EGF/EGFR system promotes cell survival, growth and differentiation via the activation of several integrated signaling pathways. In recent studies, scientists used western blotting to show that S100A4 could interact with EGF.
    In this thesis, we study the interaction between S100A4 and EGF, and we’d like to understand the complex’s characteristics. In order to meet the conditions of S100A4 NMR buffer, we dissolved EGF protein in PH6.0 solution. Using 3D NMR experiments and software calculation, we solved the structure of EGF. The binding region was characterized using 1H-15N HSQC perturbation experiments. Furthermore, we determined the binding ratio ( 1:1 ) and dissociation constant ( ~μM range ) by ITC and Fluorescent. Further studies would be necessary to characterize this interaction in more detail and to investigate if this interaction is physiologically relevant.

    摘要 I Abstract II 圖目錄 IV 表目錄 VII 縮寫表 VIII 第一章 前言 1 1-1 S100蛋白家族介紹與S100A4之特性及結構 1 1-2 EGF蛋白之特性及結構 5 1-3 表皮生長因子受體( EGFR ) 與配體 ( EGF )的相互作用 8 1-4 表皮生長因子( EGF蛋白)與S100A4蛋白之間的交互作用 11 1-5 實驗動機 13 1-6 生物核磁共振( NMR)技術介紹 14 1-7 蛋白質分子的NMR光譜循序判定(sequential assignment ) 15 1-7.1蛋白質分子的骨架循序判定 15 1-7.2蛋白質分子的支鏈循序判定 16 1-8 找尋限制條件 17 1-8.1 距離限制條件( NOE distance constraints) 17 1-8.2 雙面角限制條件 18 1-8.3 氫鍵限制條件 19 1-8.4結構計算 19 1.9 HADDOCK ( high ambiguity driven docking )介紹 20 第二章 材料與方法 23 2-1 S100A4蛋白質之取得 23 2-1.1蛋白質之表現 23 2-1.2 S100A4蛋白質之純化 25 2-1.3 EGF蛋白之取得與表現 28 2-1.4 EGF蛋白之純化 29 2-1.5 S100A4與EGF蛋白之濃度測定 31 2.2 蛋白質之基本性質鑑定 32 2-2.1蛋白質質量鑑定 32 2-2.2 螢光放射光譜( Fluorescence spectrum ) 33 2-2.3恆溫滴定熱卡計實驗 35 2-2.4 核磁共振實驗 37 第三章 結果與討論 38 3-1S1004蛋白質在大腸桿菌之表現 38 3-1.1 異丙基硫化半乳糖( IPTG )對大腸桿菌之誘導作用 38 3-1.2 S100A4蛋白質的大量表現 39 3-1.3 S100A4蛋白質之純化 40 3-1.4 EGF蛋白之純化 42 3-2 S100A4及EGF蛋白之基本性質鑑定 44 3-2.1 S100A4與EGF蛋白之分子量鑑定 44 3-3 S100A4之同位素標定實驗-2D HSQC 46 3-4 EGF蛋白之同位素標定實驗( HSQC ) 48 3-4.1 EGF蛋白之同位素標定實驗-分析三維核磁共振光譜 50 3-4.2 EGF蛋白之結構計算-前置作業 52 3-4.3 EGF蛋白之結構計算 56 3-4.4 EGF ( pH=6.0)蛋白 與EGF ( pH=6.8 )蛋白結構比較 60 3-4.5 EGF蛋白結構分析資訊 61 3-5 S100A4與EGF蛋白交互作用之探討 62 3-5.1 HSQC titration 62 3-5.2 ITC 68 3-5.3 螢光 69 3-6利用HADDOCK預測複合物結構 72 結 論 74 參考文獻 76 附錄: 1 EGF蛋白之HNCACB和HNCACB的strips 1 EGF蛋白之HNCO的strips 4

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