研究生: |
洪東耀 Tung-Yao Hung |
---|---|
論文名稱: |
以粒線體DNA探討台灣產鱨類生物地理學 Phylogeography of the bagrid catfishes in Taiwan based on mitochondrial DNA |
指導教授: |
曾晴賢
Chyng-shyan Tzeng |
口試委員: | |
學位類別: |
碩士 Master |
系所名稱: |
生命科學暨醫學院 - 生命科學系 Department of Life Sciences |
論文出版年: | 2004 |
畢業學年度: | 93 |
語文別: | 中文 |
論文頁數: | 44 |
中文關鍵詞: | 擬鱨 、生物地理學 、粒線體DNA |
外文關鍵詞: | bagridae, pseudobagrus, mitochondrial DNA, phylogeography |
相關次數: | 點閱:2 下載:0 |
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中文摘要
位於歐亞大陸邊緣的台灣島自形成後,許多物種從歐亞大陸播遷來台,主要生物相逐漸形成。棲息於島嶼的淡水魚類,是提供親緣地理研究的理想材料。鱨類Bagrus具有高度的形態多樣化並廣泛分布於亞洲,為適合研究生物地理學的一群。長期以來並無學者對台灣產鱨類的分子親緣關係做進一步的研究。
依外部型態之差異,可將台灣產鱨類分為兩群:(1)短臀擬鱨Pseudobagrus brevianalis與台灣擬鱨P. taiwanensis類群;(2)長脂擬鱨P. adiposalis。本研究用這兩類群,以PCR增幅粒線體DNA內變異速率最快的D-loop片段,結合傳統與現今分子演化探討其族群遺傳結構與地理親緣關係,並且釐清短臀擬鱨與台灣擬鱨的關係。
不論外部分類特徵或是分子遺傳證據都無法證明短臀擬鱨與台灣擬鱨同時存在。台灣產鱨類侷限在台灣西部的地理分布形態與中央山脈隆起造成的隔離有高度相關。依據親緣關係樹,這兩種擬鱨以苗栗丘陵為界,各自分為北部群與中部群兩個分群。不論是族群內或族群間,這兩種擬鱨的粒線體D-loop序列的歧異度都不是非常高,短臀擬鱨有10種基因型,遺傳距離為0.1%~1.6%,長脂擬鱨有三種基因型,遺傳距離為0.3% ~1.8%。
從分子的證據上顯示,本島現生的鱨類應存在兩種明顯有效種--短臀擬鱨與長脂擬鱨,雖然在形態上不足以說明短臀擬鱨與長脂擬鱨各自的分群是不同種,但每一種之不同地理區之間的遺傳距離相當明顯,因此可能是在亞種的階層。
Abstract
Taiwan island locates at the margin of Eurasia plate. Lots of species have dispersed from the mainland of Eurasia to Taiwan after the formation of the island. The main biota of Taiwan has formed consequently. Freshwater fishes dwelling in island-like habitats provide an ideal model for phylogeographical studies. Bagrids are an attractive group because of a great morphological diversity and wide distribution. But only a few studies focused on the phylogenetic relationships of Taiwan bagrids.
Based on the comparisons of their morphological characters, this group of fishes can be divide into two groups: (1) Pseudobagrus brevianalis and P. taiwanensis; (2) P. adiposalis . The aim of our present work are to sequence D-loop of thses two groups and then to analyse population genetic structures and the phylogeographical patterns and the relationships of P. brevianalis and P. taiwanensis.
No matter the morphological characters or genetic evidence can’t prove that P. brevianalis and P. taiwanensis are both existed . The biogeographical pattern of bagrid catfishes in Taiwan, with a distribution range restricted to western Taiwan, is highly correlated with the topographical isolation by the Central Mountain Range. According to the phylogenetic tree, the populations of the two species demarcated by Miaoli Plateau and fell into two clusters: (1) the northern group; (2) the central group. Genetic variability in the mitochondrial control region of the bagrid catfishes in Taiwan examined was low at both within- and among- population levels. P. brevianalis has ten haplotypes and the genetic distance is from 0.1% to 1.6%, and P. adiposalis has three haplotypes and the genetic distance is from 0.3% to 1.8%. According to the previous studies and this work, the low variability in bagrids should be explainable by some historical biogeographic reason or molecular evolutionary rate . Genetic distance between northern population and middle population is high, although the morphological characters are quiet similar. The results suggest northern population and middle population are possible subspecies.
Avise, J. C., Arnold, J., Ball, R. M., Bermingham, E., Lamb, T., Neigel, J. E., Reeb, C. A. and Saunders, N. C. (1987). Intraspecific phylogeography: the mitochondrial DNA bridge between population genetics and systematics. Ann. Rev. Ecol. Syst. 18:489-522
Bleeker, P. (1866). Atlas ichthyologique des Indes Orientales Neerlandaises. Tome II. Siluroides, Chacoides et Heterobranchoides, Amsterdam (F. Muller), pp.1-112, pls. 49-101.
Chung, I. H. (1969). A review of catfishes of Taiwan. Ichth. Ser. Tunghai Jour., 14:27-98.
Hillis, D. M. and Moritz, C. (1990). Molecular systematics. Sinauer Associates, Inc. Sanderland, MA.
Jayaram, K. C. (1968). Contributions to the stud of bagrid fishes (Siluroidae; Bagridae) III. A systematic account of the Japanese, Chineses, Malayan and Indonesian genra. Treubia 27(2~3):287.
Jean, C. T., Lee, S. C., Hui, C. F. and Chen, C. T. (1995). Phylogenetic relationships of fishes of the subfamily Sparinae (Perciformes: Sparidae) from the costal waters of Taiwan. J Zool Syst Evol Res 33:49-53.
Kumar, S. K., Tamura, I. B., Jakobsen and Nei, M. (2001). MEGA2: Molecular evolutionary genetics analysis software, Bioinformatics.
Lee, W. J., Conroy, J., Howell, W. H. and Kocher, T. D. (1995). Structure and evolution of Teleost mitochondrial control regions. J. Mol. Evol. 41:54-66.
Mo, T. (1991). Anatomy and systematics of Bagridae (Teleostei), and siluroid phylogeny. Koeltz Scientific books, Koenigstein, Germany.
Moritz, C., Dowling, T. E. and Brown, W. M. (1987). Evolution of animal mitochondrial DNA: relevance for population biology and systematics. Ann. Rev. Evol. Syst. 18:269-292.
Oshima, M. (1919). Contribution to the study of the freshwater fishes of the island of Formosa. Ann. Carneg. Mus. 13 (2-4):178-183.
Peng, Z. G., He, S. P. and Zhang, Y. G. (2002). Mitochondrial cytochrome b sequence variations and phylogeny of the East Asian bagrid catfishes. Progress in Natural Science 12(6):421-425.
Regan, C. T. (1911). The classification of teleostean fishes of the order Ostariophysi II, Siluroidea. Ann. Mag. Nat. Hist. London 8(8):553.
Regan, C. T. (1913a). Description of new freshwater fishes from China and Japan. Ann. Mag. Nat. Hist. 8 (1):149-153.
Regan, C. T. (1913b). A synopsis of the siluroid fishes of the genus Liocassis, with descriptions of new species. Ann. Mag. Nat. Hist. 8 (11):547-554.
Tamura, K. and Nei, M. (1993). Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. Mol. Biol. Evol. 10:512-526.
Tzeng, C. S. (1986). Distribution of the freshwater fishes of Taiwan. J. Taiwan Mus. 39(2):11-19.
Tzeng, C. S., Hui, C. F., Shen, S. C. and Huang, P. C. (1992). The complete nucleotide sequence of the Crossostoma lacustre mitochondrial genome: Conservation and variations among vertebrates. Nucleic Acids Res. 20:4853-4858.
Wang, J. P., Hsu, K. C. and Chiang, T. Y. (2000). Mithochondrial DNA phylogeography of Acrossocheilus paradoxus (Cyprinidae) in Taiwan. Molecular Ecology. 9:1483-1494.
Wang, J. P., Lin, H. D., Huang, S., Pan, C. H., Chen, X. L. and Chiang, T. Y. (2004). Phylogeography of Varicorhinus barbatulus (Cyprinidae) in Tqiwan based on nucleotide variation of mtDNA and allozymes. Mol. Phylogenet. Evol. 31:1143-1156.
Watanabe, K., Zhang, C. G. and Zhao, Y. H. (2002). Redescription of the East Asian bagrid catfish, Pseudobagrus kyphus Mai, 1978, and a new record from China. Ichthyol. Res .49:384-388.
Watanabe, K. and Nishida, M. (2003). Genetic population structure of Japanese bagrid catfishes. Ichthyol. Res. 50:140-148.
Wilson, G. M., Thomas, W. K. and Bechenbach, A. T. (1985). Intra and inter specific mitochondrial DNA sequence divergence in Salmon: rainbow, steelhead, and cutthroat trouts. Can. J. Zool. 63:2088-2094.
Yap, S Y. (2002). On the disributional patterns of Southeast-East Asian freshwater fish and their history. Journal of Biogeography 29:1187-1199.
王子元,1997,台灣與鄰近地區腹吸鰍族魚類之親緣關係之研究。國立清華大學生命科學系,碩士論文。
王漢泉 ,1982, 淡水河流域魚種分佈調查。中國水產,357:7-16頁。
王漢泉 ,1983, 淡水河魚種分佈與水質關係之初步研究。中國水產,
372:25-34頁。
李思忠,1981,中國淡水魚類相的分布區劃。科學出版社。中國北京。
李思忠、陳星玉和陳小平,1994。世界魚類。水產出版社,144頁。
李德旺,1995,南投縣河川魚類之調查。南投縣生物資源調查成果彙編,135-164頁。
李德旺、邱啟銘、蔡昕皓,1997a,雲林縣河川魚類之調查。雲林縣生物資源調查成果彙編,77-91頁。
李德旺、邱啟銘、蔡昕皓,1997b,彰化縣河川魚類之調查。彰化縣生物資源調查成果彙編,73-87頁。
沈世傑,1993,台灣魚類誌。台灣大學動物系印行。台北。
林朝棨,1963,台灣之第四紀。台灣文獻,14:1-92頁。
林朝棨,1966,從地理學論台灣與大陸。台灣史蹟研究會。
陳兼善、于名振,1986,台灣脊椎動物誌(上、中冊)。台灣商務印書館。台北。
陳聖宗,2001,台灣與鄰近地區小鰾鮈分子親緣關係之研究。清華大學生命科學系碩士論文。新竹。
陳義雄、方力行,1999,台灣淡水及河口魚類誌。國立海洋生物博物館籌備處。屏東。
詹見平 ,1991,大安溪的魚類生態。中國水產,463:21-61頁。
張明雄,1994,大甲溪中、下游魚類群聚研究。台灣大學動物學系博士論文。台北。
□玉萍,2001,台灣島形成過程對台灣淡水魚族群遺傳結構影響之研究。清華大學生命科學系碩士論文。新竹。