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研究生: 湯序正
論文名稱: 脯胺酸衍生物對於人類 Pin1雙色胺酸功能區的穩定性以及功能性探討
Thermodynamic and Functional Studies of Incorporating 4-Substituted Proline Derivatives into hPin1 WW Domain
指導教授: 洪嘉呈
口試委員: 陳貴通
李賢明
學位類別: 碩士
Master
系所名稱: 理學院 - 化學系
Department of Chemistry
論文出版年: 2012
畢業學年度: 100
語文別: 中文
論文頁數: 91
中文關鍵詞: 脯胺酸胜肽
外文關鍵詞: WW domain
相關次數: 點閱:2下載:0
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  • 我們使用人類 Pin1蛋白質中一個位在N端上稱為 WW domain的胜肽,來當作研究立體電子效應應用在胜肽折疊與和配體結合能力的小蛋白模型。WW Domain具有緊密、三股且反平行的β-sheet結構;而高度保留在各種WW domain 37號胺基酸位置的 proline (P37)在結構上扮演重要的角色,原因在於P37會與某些殘基形成一個疏水核,是用來穩定 WW domain的重要關鍵。原始的 WW Domain中 P37的位相是傾向 Cγ–endo的環構形,我們使用(2S,4R)-4-hydroxy- proline (Hyp), (2S,4R)-4-fluoroproline (Flp), (2S,4R)-4-methoxyproline (Mop), (2S,4S)-4-hydroxyproline (hyp), (2S,4S)-4-fluoroproline (flp), and (2S,4S)-4- methoxyproline (mop)這些非天然的胺基酸衍生物進行取代,探討構形對於結構穩定性和與配體結合力之影響。在變溫實驗和化學變性量測實驗中,我們可以觀察到使用 flp取代的 WW flp37,較原始的 WW domain來得更穩定一些,其他的變異蛋白則較原胜肽不穩定。由此可以看出立體電子效應對於造成不同環構形在結構穩定上並不是主要因素。另外,WW domain可以與含有磷酸的 serine/ threonine-proline胜肽進行結合。我們用等溫滴定卡計 (ITC)測量 WW domain與含磷酸根的配體 VPRpTPVGY之間的結合親合力。在25 °C下,WW flp37的解離常數( Kd)較原始 WW domain來得低,但其他的變異 WW Domain胜肽則有較高的 Kd,顯示 flp可以穩定 WW domain,並且增強其與配體之結合能力。至於其他脯胺酸衍生物則會造成 WW domain結構較為鬆散且不穩定而降低甚至失去與配體之結合能力。


    中文摘要 I Abstract II 目錄 i 圖目錄 iv 表目錄 vii 第一章 緒論 1 1.1 蛋白質簡介 1 1.2 肽基脯胺酸順反異構脢 (PPIase)簡介 2 1.3 Human Pin1介紹 5 1.4 hPin1 WW domain介紹 8 1.5 立體電子效應 (stereoelectronic effect)介紹 13 1.5.1 立體電子效應對於 proline側環構形的影響 15 1.5.2 立體電子效應對小型蛋白質結構的影響 17 1.6 固相胜肽合成法介紹 19 1.6.1 酯化反應 (esterification) 21 1.6.2 去保護 (deprotection) 21 1.6.3 活化 (activation) 22 1.6.4 耦合 (coupling) 22 1.6.5 切除 (cleavage) 23 1.7 圓二色光譜儀 (Circular dichroism, CD)介紹 23 1.8 等溫滴定卡計 (Isothermal titration calorimetry, ITC)介紹 27 1.9 研究動機 31 第二章 實驗部分 33 2.1 儀器型號 33 2.2 使用藥品 35 2.3 Proline 衍生物的合成與鑑定 37 2.3.1 化合物的合成 39 2.4 胜肽的合成、純化與鑑定 43 2.4.1 hPin1 WW domain 合成 43 2.4.2 固態合成實驗步驟 46 2.5 光譜測量 47 2.5.1 UV光譜測量濃度 47 2.5.2 CD光譜測量 48 2.5.3 ITC實驗測量 49 2.5.4 螢光實驗測量 50 2.6 光譜數據分析 50 2.6.1 CD變溫實驗的數據整理 50 2.6.2 化學誘導變性 CD實驗的數據處理 52 2.6.3 ITC 實驗數據整理 54 2.6.4 NMR光譜 54 第三章 實驗結果與討論 55 3.1 WW domain 胜肽 CD量測探討 55 3.2 WW domain變溫實驗探討 58 3.3 CD化學誘導變性實驗探討 61 3.4 以 ITC之實驗數據進行 WW domain系列胜肽之結合能力探討 64 3.5 WW domain 胜肽與配體 CDC25C結合之 CD量測探討 69 3.6 WW domain 胜肽與配體 CDC25C結合之螢光量測探討 71 3.7 2D NMR 光譜探討 73 3.8 結果討論 76 第四章 結論 79 第五章 參考文獻 80 第六章 附錄 85

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