簡易檢索 / 詳目顯示

研究生: 馮政凱
論文名稱: 篩選新的細菌素並藉由修飾以探討其對腸癌細胞的抑制效果
Indentification and modification of two new bacteriocins from database that may have the anticancer potential.
指導教授: 林志侯
口試委員: 林志侯
高茂傑
彭明德
學位類別: 碩士
Master
系所名稱: 生命科學暨醫學院 - 分子醫學研究所
Institute of Molecular Medicine
論文出版年: 2013
畢業學年度: 101
語文別: 中文
論文頁數: 72
中文關鍵詞: 細菌素抗菌胜肽大腸癌
外文關鍵詞: human colon cancer
相關次數: 點閱:2下載:0
分享至:
查詢本校圖書館目錄 查詢臺灣博碩士論文知識加值系統 勘誤回報
  • 近年來研究者對於抗菌胜肽(Antimicrobial peptide, AMPs)除了在抗菌能力上的發展之外,對於抑制癌細胞生長或者藥物開發上都逐漸受到重視。主要原因是抗菌胜肽來自生物體本身而非經由人類利用物理化學技術合成,故比較不容易有抗藥性的產生。細菌素(bacteriocin)則是來自細菌的一種抗菌胜肽。本篇論文從細菌篩選出可能的細菌素及其活性表現的探討。根據實驗室之前的研究指出,利用已知的細菌素結構跟特性進行分析,我們可以在NCBI、PFAM等資料庫中篩選出可能的細菌素。本實驗發現兩個基因的編碼可能為細菌素,分別是BD_21,BD_22,其存在部分Lactobacillus Casei 菌種中。
    我們利用基因轉殖技術並以大腸桿菌系統生產BD21和BD22後進行活性測試。結果顯示,BD21和BD22對於實驗室現有的有害菌跟益生菌都沒有抑制效果,將BD21和BD22等比例混合後也沒發現有任何活性。因此決定針對BD21,BD22的胺基酸序列進行修飾。因為細菌及部分癌細胞之細胞膜表面的淨電荷為負電,因此將BD21和BD22的帶負電胺基酸例如:Asp、Glu利用基因技術修飾成不帶電胺基酸Ser,使淨電荷電性為正電,以此修飾增加BD21和BD22與細胞膜的結合力。結果發現修飾後的BD21m和BD22m(m表示修飾後)的抗菌能力並無顯著改變。另一方面,我們利用MTT assay測試BD21和BD22以及BD21m和BD22m對真核細胞活性的影響,結果發現不論是修飾前的BD22或修飾後的BD22m對於人類大腸癌細胞Human colon adenocarcinoma cell,SW480都有相當的毒殺效果。其中又以BD22m對SW480的毒殺效果最好,至於BD21和BD21m則沒有顯著影響。另外也發現BD22和BD22m對於Human normal fibroblast比較沒有毒殺效果。接著單染PI及雙染Annexin V、PI,並以流式細胞儀(flow cytometry)進行分析,分別可觀察細胞週期以及是否為apoptosis或necrosis。結果顯示BD22和BD22m對於SW480為apoptosis跟部分necrosis,因此未來工作將鎖定在apoptosis機制的探討。


    Recently, scientists pay attention to Antimicrobial peptides(AMPs) due to the fact that AMPs is not only antibacteria , but anticancer and can be used in drug as well. Not produced from artificial methods, the AMPs are made by an organism. Therefore, the AMPs do not have drug resistance. The AMPs made from bacteria that is called bacteriocin. we screen a potential bacteriocin and have a test about this bacteriocin in this study. Analyzing characteristics and structures of known bacteriocins, investigated by a recent study from the lab, we screen a potential bacteriocin from database like NCBI and PFAM. In summary, we find two genes are coding about bacteriocin. The genetic codes of potential bacteriocin are BD_21 and BD_22, which exist in bacteria like Lactobacillus casei.
    We produce BD21 and BD22 from E. coli by gene clonig system and test the activity . The result of activity shows that BD21 and BD22 have no activity after treated with bacteria. In addition, we do not find any activity of BD21 and BD22 after mixing BD21 and BD22 in the same proportion. Consequently, we decide to modify the peptides from amino acid sequence .Owing to the fact that bacteria and some cell membrane surface of cancer cells have negative charges, we change the amino acid which is negative of BD21 and BD22, Asp and Glu, to Ser which is no electricity, by a genetic technology. This modification can increase the interaction between BD21 and cell membrane or BD22 and cell membrane. After the modification, the antibacterial ability of BD21m and BD22m has no changes.(m means after modification)
    On the other hand, we test BD21, BD22, BD21m and BD22m by MTT assay in order to know an influence of cell with these four potential bacteriocins. According to MTT assay, we find that BD22 and BD22m, can inhibit growth of the human colon adenocarcinoma cell,SW480. In particular, BD22m has the great inhibition to SW480, however, BD21 and BD21m have no influence. Furthermore, we find that BD22 and BD22m can’t inhibit growth of human normal fibroblast,HFW. Analyzing stained PI and stained Annexin V、PI by flow cytometry in order to observe cell cyle and whether the cell death is apoptosis or necrosis, we discover that BD22 and BD22m are apoptosis and some part of necrosis for SW480. Hence, a future work will focus on apoptosis mechanism and improve the activity of BD22.

    目錄 篩選新的細菌素並藉由修飾以探討其對腸癌細胞的抑制效果 I Indentification and modification of two new bacteriocins from database that may have the anticancer potential. I 指導教授:林志侯 博士 (Dr. Thy-Hou Lin) I Abstract I 摘要 III 致謝辭 V 目錄 VI 前言 1 材料與方法 8 結果 27 討論 38 圖 43 圖一:BD21和BD22的PCR check。 43 圖二:pAB載體。 44 圖四:overlapping得到的BD21m和BD22m DNA。 46 圖五之一:待表現的TRX-BD21和TRXBD22的DNA片段和pAB載體。 47 圖五之二:待表現的TRX-BD21m和TRXBD22m的DNA片段和pAB載體。 48 圖六:BD21m和BD22m,Tricine-SDS-PAGE。 49 圖七:BD21對於SW480的細胞存活率。每次測試在相同條件下皆為四重複。共三次測試。軟體定量計算為p>0.05。con為medium加上10mM Tris-HCL pH8.0。 50 圖八:BD21m對於SW480的細胞存活率。每次測試在相同條件下皆為四重複。共三次測試。軟體定量計算為p>0.05。con為medium加上10mM Tris-HCL pH8.0。 50 圖九:BD22對於SW480的細胞存活率。每次測試在相同條件下皆為四重複。共三次測試。軟體定量計算為p<0.05。con為medium加上10mM Tris-HCL pH8.0。 51 圖十:BD22m對於SW480的細胞存活率。每次測試在相同條件下皆為四重複。共三次測試。軟體定量計算為p<0.05。con為medium加上10mM Tris-HCL pH8.0。 51 圖十一:BD22和BD22m在相同濃度下並且在同次實驗中對於並且在同次實驗中對於SW480和HFW的細胞存活率。每次測試在相同條件下皆為四重複。共三次測試。軟體定量計算為p<0.05。con為medium加上10mM Tris-HCL pH8.0。 52 圖十三:BD22m 15μg/ml 分別以6, 12, 24小時進行反應後以PI單染由流式細胞儀分析。con為medium加上10mM Tris-HCL pH8.0。 54 圖十四:BD22 30μg/ml 以24小時反應後以PI和annexin V雙染並由流式細胞儀分析。con為medium加上10mM Tris-HCL pH8.0。 54 圖十五:BD22 30μg/ml以24小時反應後的雙染結果做成長條圖。p<0.05,n=3,UR=apoptosis late phase + necrosis,LR=apoptosis early phase。 55 圖十六:BD22m 15ug/ml 以6, 12, 24小時反應後以PI和annexin V雙染並由流式細胞儀分析。con為medium加上10mM Tris-HCL pH8.0。 56 圖十七:BD22m 15ug/ml 以12小時反應後以PI和annexin V雙染並由流式細胞儀分析。con為medium加上10mM Tris-HCL pH8.0。 56 圖十八:BD22m 15μg/ml以12小時反應後的雙染結果做成長條圖。p<0.05,n=3,UR=apoptosis late phase + necrosis,LR=apoptosis early phase。 57 附錄 58 附錄一、論文中使用的primer 58 附錄二、overlapping圖示。 59 附錄三、實驗中所使用到的菌種與培養條件。 60 附錄四、Pfam對BD22的預測結果。 63 附錄五、Pfam對BD21的預測結果。 63 附錄六、Pfam對BD20的預測結果。 64 附錄七、pAB和BD21的質體建構圖。 64 附錄八、pAB和BD22的質體建構圖。 65 附錄九、pAB和BD21m的質體建構圖。 66 附錄十、pAB和BD22m的質體建構圖。 67 附錄十一、細胞週期圖。 68 參考文獻 69

    參考文獻
    1 Nissen-Meyer, J. & Nes, I. F. Ribosomally synthesized antimicrobial peptides: their function, structure, biogenesis, and mechanism of action. Archives of microbiology 167, 67-77 (1997).
    2 Kjos, M., Snipen, L., Salehian, Z., Nes, I. F. & Diep, D. B. The abi proteins and their involvement in bacteriocin self-immunity. Journal of bacteriology 192, 2068-2076, doi:10.1128/JB.01553-09 (2010).
    3 Nissen-Meyer, J., Rogne, P., Oppegard, C., Haugen, H. S. & Kristiansen, P. E. Structure-function relationships of the non-lanthionine-containing peptide (class II) bacteriocins produced by gram-positive bacteria. Current pharmaceutical biotechnology 10, 19-37 (2009).
    4 Hancock, R. E. & Chapple, D. S. Peptide antibiotics. Antimicrobial agents and chemotherapy 43, 1317-1323 (1999).
    5 Tossi, A., Sandri, L. & Giangaspero, A. Amphipathic, alpha-helical antimicrobial peptides. Biopolymers 55, 4-30, doi:10.1002/1097-0282(2000)55:1<4::AID-BIP30>3.0.CO;2-M (2000).
    6 Oren, Z. & Shai, Y. Mode of action of linear amphipathic alpha-helical antimicrobial peptides. Biopolymers 47, 451-463, doi:10.1002/(SICI)1097-0282(1998)47:6<451::AID-BIP4>3.0.CO;2-F (1998).
    7 Matsuzaki, K. Magainins as paradigm for the mode of action of pore forming polypeptides. Biochimica et biophysica acta 1376, 391-400 (1998).
    8 Cotter, P. D., Hill, C. & Ross, R. P. Bacteriocins: developing innate immunity for food. Nature reviews. Microbiology 3, 777-788, doi:10.1038/nrmicro1273 (2005).
    9 Berridge, N. J. Preparation of the antibiotic nisin. The Biochemical journal 45, 486-493 (1949).
    10 Fimland, G., Johnsen, L., Dalhus, B. & Nissen-Meyer, J. Pediocin-like antimicrobial peptides (class IIa bacteriocins) and their immunity proteins: biosynthesis, structure, and mode of action. Journal of peptide science : an official publication of the European Peptide Society 11, 688-696, doi:10.1002/psc.699 (2005).
    11 Drider, D., Fimland, G., Hechard, Y., McMullen, L. M. & Prevost, H. The continuing story of class IIa bacteriocins. Microbiology and molecular biology reviews : MMBR 70, 564-582, doi:10.1128/MMBR.00016-05 (2006).
    12 Riley, M. A. & Wertz, J. E. Bacteriocins: evolution, ecology, and application. Annual review of microbiology 56, 117-137, doi:10.1146/annurev.micro.56.012302.161024 (2002).
    13 Nissen-Meyer, J., Holo, H., Havarstein, L. S., Sletten, K. & Nes, I. F. A novel lactococcal bacteriocin whose activity depends on the complementary action of two peptides. Journal of bacteriology 174, 5686-5692 (1992).
    14 Moll, G. et al. Lactococcin G is a potassium ion-conducting, two-component bacteriocin. Journal of bacteriology 178, 600-605 (1996).
    15 Moll, G. et al. Mechanistic properties of the two-component bacteriocin lactococcin G. Journal of bacteriology 180, 96-99 (1998).
    16 Netz, D. J. et al. Biochemical characterisation and genetic analysis of aureocin A53, a new, atypical bacteriocin from Staphylococcus aureus. Journal of molecular biology 319, 745-756, doi:10.1016/S0022-2836(02)00368-6 (2002).
    17 Salminen, S. et al. Demonstration of safety of probiotics -- a review. International journal of food microbiology 44, 93-106 (1998).
    18 Isolauri, E., Sutas, Y., Kankaanpaa, P., Arvilommi, H. & Salminen, S. Probiotics: effects on immunity. The American journal of clinical nutrition 73, 444S-450S (2001).
    19 Mann, G. V. Studies of a surfactant and cholesteremia in the Maasai. The American journal of clinical nutrition 27, 464-469 (1974).
    20 Schiffrin, E. J., Brassart, D., Servin, A. L., Rochat, F. & Donnet-Hughes, A. Immune modulation of blood leukocytes in humans by lactic acid bacteria: criteria for strain selection. The American journal of clinical nutrition 66, 515S-520S (1997).
    21 Wollowski, I., Rechkemmer, G. & Pool-Zobel, B. L. Protective role of probiotics and prebiotics in colon cancer. The American journal of clinical nutrition 73, 451S-455S (2001).
    22 Gibson, G. R., McCartney, A. L. & Rastall, R. A. Prebiotics and resistance to gastrointestinal infections. The British journal of nutrition 93 Suppl 1, S31-34 (2005).
    23 Joo, N. E., Ritchie, K., Kamarajan, P., Miao, D. & Kapila, Y. L. Nisin, an apoptogenic bacteriocin and food preservative, attenuates HNSCC tumorigenesis via CHAC1. Cancer medicine 1, 295-305, doi:10.1002/cam4.35 (2012).
    24 Chen, H. M., Wang, W., Smith, D. & Chan, S. C. Effects of the anti-bacterial peptide cecropin B and its analogs, cecropins B-1 and B-2, on liposomes, bacteria, and cancer cells. Biochimica et biophysica acta 1336, 171-179 (1997).
    25 Cruciani, R. A., Barker, J. L., Zasloff, M., Chen, H. C. & Colamonici, O. Antibiotic magainins exert cytolytic activity against transformed cell lines through channel formation. Proceedings of the National Academy of Sciences of the United States of America 88, 3792-3796 (1991).
    26 Ye, J. S., Zheng, X. J., Leung, K. W., Chen, H. M. & Sheu, F. S. Induction of transient ion channel-like pores in a cancer cell by antibiotic peptide. Journal of biochemistry 136, 255-259, doi:10.1093/jb/mvh114 (2004).
    27 Lichtenstein, A. Mechanism of mammalian cell lysis mediated by peptide defensins. Evidence for an initial alteration of the plasma membrane. The Journal of clinical investigation 88, 93-100, doi:10.1172/JCI115310 (1991).
    28 Lehrer, R. I., Lichtenstein, A. K. & Ganz, T. Defensins: antimicrobial and cytotoxic peptides of mammalian cells. Annual review of immunology 11, 105-128, doi:10.1146/annurev.iy.11.040193.000541 (1993).
    29 Jacob, L. & Zasloff, M. Potential therapeutic applications of magainins and other antimicrobial agents of animal origin. Ciba Foundation symposium 186, 197-216; discussion 216-123 (1994).
    30 Richard, C., Drider, D., Elmorjani, K., Marion, D. & Prevost, H. Heterologous expression and purification of active divercin V41, a class IIa bacteriocin encoded by a synthetic gene in Escherichia coli. Journal of bacteriology 186, 4276-4284, doi:10.1128/JB.186.13.4276-4284.2004 (2004).
    31 Saiki, R. K. et al. Enzymatic amplification of beta-globin genomic sequences and restriction site analysis for diagnosis of sickle cell anemia. Science 230, 1350-1354 (1985).
    32 Brosius, J. Compilation of superlinker vectors. Methods in enzymology 216, 469-483 (1992).
    33 Schagger, H. Tricine-SDS-PAGE. Nature protocols 1, 16-22, doi:10.1038/nprot.2006.4 (2006).
    34 Klaenhammer, T. R. Bacteriocins of lactic acid bacteria. Biochimie 70, 337-349 (1988).
    35 Wu, X. & Lippman, S. M. An intermittent approach for cancer chemoprevention. Nature reviews. Cancer 11, 879-885, doi:10.1038/nrc3167 (2011).

    無法下載圖示 全文公開日期 本全文未授權公開 (校內網路)
    全文公開日期 本全文未授權公開 (校外網路)
    全文公開日期 本全文未授權公開 (國家圖書館:臺灣博碩士論文系統)
    QR CODE