基於合成影像與公開資料集用於醫療影像之聯邦學習研究

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研究生：	余宣汶 Yu, Hsuan-Wen
論文名稱：	基於合成影像與公開資料集用於醫療影像之聯邦學習研究 Dynamically synthetic images with open datasets for Federated learning
指導教授：	銀慶剛 Ing, Ching-Kang 盧鴻興 Lu, Horng-Shing
口試委員:	杜憶萍 Tu, I-Ping 陳素雲 Huang, Su-Yun
學位類別：	碩士 Master
系所名稱：	理學院 - 統計學研究所 Institute of Statistics
論文出版年：	2023
畢業學年度：	111
語文別：	中文
論文頁數：	47
中文關鍵詞：	深度學習、聯邦學習、醫學影像
外文關鍵詞：	COVID-19, Deep learning, Federted learning
相關次數：	點閱：92 下載：0
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醫學診斷的深度學習模型需要大量的數據，但由於隱私法規的限制，從多
個醫療機構收集數據很困難。聯邦學習提供了一種解決方案，可以實現在各
種機構分布的數據上聯合訓練模型，而不需要集中數據。然而，聯邦學習模
型可能存在對具有較大訓練數據集的機構存在偏見的問題，這是需要注意的
潛在問題。我們的研究引入了一種結合動態合成圖像聯邦學習與開放數據集
（FLOMS）的新技術，可以有效地結合來自開放數據集和具有異構數據類型
的本地醫療機構的信息。FLOMS的關鍵特徵是其能夠動態生成合成圖像，模
擬當前模型錯誤分類的本地數據，加上可以幫助訓練少量圖像的開放數據集的
信息。這允許開發一個全域模型，可以更好地處理本地機構收集的數據類型的
多樣性，特別是包括訓練類似本地數據集中被錯誤分類的合成圖像。在評估
我們模型的性能時，我們優先考慮每個客戶端數據集的準確性。實驗結果顯
示，FLOMS在模型準確性方面優於傳統聯邦學習方法。

Deep learning models for medical diagnosis require large amounts of data, which
is difficult to collect from multiple medical institutions due to privacy regulations.
Federated Learning (FL) offers a solution by enabling joint training of models with
data distributed across various institutions, without requiring data to be centralized. However, FL models can suffer from bias towards institutions with larger
training datasets, which is a potential issue to be aware of. Our study introduces
a new technique called Dynamically Synthetic Images for Federated Learning with
open datasets (FLOMS) that can effectively combine information from an open
dataset and local medical institutions with heterogeneous data types. The key
feature of FLOMS is its ability to dynamically generate synthetic images that
mimic local data which the current model is misclassifying and get the information of the open datasets that can help train the small number of images. This
allows for the development of a global model that can better handle the diversity in the types of data collected by local institutions, especially including the
incorporation of training on images that resemble the misclassified cases in local
datasets. When evaluating the performance of our model, we prioritize the accuracy of each client’s individual dataset and overall accuracy. The experimental
results show that FLOMS outperforms the conventional FL approach in terms of
model accuracy.

Contents
Abstract (Chinese) I
Acknowledgements (Chinese) II
Abstract III
Acknowledgements IV
Contents V
List of Figures VIII
List of Tables IX
List of Algorithms X
Introduction 1
Literature review 3
Backbone Technique 5
1 Convolutional neural networks . . . . . . . . . . . . . . . . . . . . . 5
1.1 Transfer learning . . . . . . . . . . . . . . . . . . . . . . . . 6
1.2 EfficientNet . . . . . . . . . . . . . . . . . . . . . . . . . . . 6
2 Federated learning . . . . . . . . . . . . . . . . . . . . . . . . . . . 7
V
2.1 Federated averaging algorithm . . . . . . . . . . . . . . . . . 8
3 Synthetic Method . . . . . . . . . . . . . . . . . . . . . . . . . . . . 9
3.1 Synthetic Minority Oversampling . . . . . . . . . . . . . . . 9
3.2 Borderline SMOTE . . . . . . . . . . . . . . . . . . . . . . . 11
Methodology 13
1 Problem statement . . . . . . . . . . . . . . . . . . . . . . . . . . . 13
2 Method design . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 14
2.1 Dynamically synthetic images . . . . . . . . . . . . . . . . . 14
2.2 Monitor the best communication round . . . . . . . . . . . . 17
2.3 Open datasets . . . . . . . . . . . . . . . . . . . . . . . . . . 18
Macterials and Experimental settings 25
1 COVID-19 Chest X-ray Image Datasets . . . . . . . . . . . . . . . . 25
1.1 Fundus Image Data . . . . . . . . . . . . . . . . . . . . . . . 27
2 Skin datasets . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 28
3 Experiment setting of Dynamically synthetic images . . . . . . . . . 29
4 Experiment setting of open datasets . . . . . . . . . . . . . . . . . . 30
5 Data Preprocessing and Augmentation . . . . . . . . . . . . . . . . 30
Experiment results 32
1 Dynamically synthetic images . . . . . . . . . . . . . . . . . . . . . 32
1.1 COVID-19 datasets . . . . . . . . . . . . . . . . . . . . . . . 32
1.2 Fundus images datasets . . . . . . . . . . . . . . . . . . . . 33
1.3 Skin datasets . . . . . . . . . . . . . . . . . . . . . . . . . . 34
2 Open datasets . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 34
2.1 Skin datasets . . . . . . . . . . . . . . . . . . . . . . . . . . 35
2.2 COVID datasets . . . . . . . . . . . . . . . . . . . . . . . . 37
2.3 Fundus images datasets . . . . . . . . . . . . . . . . . . . . 39
VI
Conclusion and future work 41
Bibliography 43
                                

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