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研究生: 林弘盛
Lin, Hung sheung
論文名稱: 藉由訊號放大偵測蛋白質之半合成蛋白探針
Semisynthetic Protein Probes for Protein Detection by Signal Amplification
指導教授: 陳貴通
Tan, Kui-Thong
口試委員: 王聖凱
Sheng Kai Wang
許馨云
Hsing Yun Hsu
陳貴通
Kui-Thong Tan
學位類別: 碩士
Master
系所名稱: 理學院 - 化學系
Department of Chemistry
論文出版年: 2014
畢業學年度: 102
語文別: 中文
論文頁數: 89
中文關鍵詞: 訊號放大蛋白質偵測
外文關鍵詞: signal amplification, protein detection
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  • 蛋白質為人體之重要組成,調控人體許多新陳代謝。蛋白質失調會造成許多疾病,因此偵測蛋白質成為重要課題。偵測蛋白質之技術被廣為開發,其中以酵素免疫分析法最廣為人知。但這些技術皆需繁瑣的前處理,我們希望發展一個半合成訊號放大探針偵測蛋白質。
    透過生物重組蛋白技術合成SNAP-hCAII,以SNAP-tag 標記上有機探針。此探針含有磺胺抑制劑結構(sulfonamide, SA)、O6-苄基鳥嘌呤(O6-benzylguanine,BG)及生物素(biotin)。磺胺抑制劑結構(sulfonamide, SA)可抑制人類碳酸酐II(hCAII)活性,形成封閉系統。加入抗生物素蛋白(avidin)後,產生立障效應(steric effect),使磺胺抑制劑結構(SA)脫離,hCAII恢復活性,得以水解Fluorescein diacetaete,產生訊號放大的螢光效果。此系統抑制效果不佳,探討SNAP蛋白是否會影響hCAII之抑制效果,嘗試以hCAII和SNAP-hCAII進行螢光測試,發現使用hCAII比SNAP-hCAII有更高的螢光增益。因此之後發展捨棄合成O6-benzylguanine,且蛋白質使用hCAII,不必經過生物選殖技術合成SNAP-hCAII,此探針具有更佳的螢光增益及便利性。


    Protein plays an important role in our body. Enzyme is a kind of protein. It can regulate metabolism. Many disease is due to deregulatory of protein. Thus, detection of protein is an important issue.
    Nowadays, there are two famous detection methods. One is enzyme-linked immunosorbent assay (ELISA)which utilizes antibody to obtain specific binding for protein detection. The other is Western blot. It combines gel electrophoresis to separate protein and detects by antibody. This two methods are time consuming , high cost and require multi-steps operation.
    In this thesis, we described a new enzyme amplified method for protein detection based on semisynthetic protein sensor. Through molecular biology and organic synthesis, we constructed a recombinant protein SNAP-HCA and a synthetic compound. As a proof-of-principle, we will demonstrate the design of our semisynthetic protein sensor for the detection of avidin. The function of SNAP-tag protein is to facilitate specific labeling of the the synthetic compound to the recombinant protein, while the function of HCA is to regulate enzyme amplification during protein detection. The synthetic compound consists of three functional units and they are benzylguanine (BG) for specific labeling to the recombinant protein via SNAP-tag, biotin group for the binding and recognition with avidin, and a sulfonamide inhibitor for the regulation of HCA activity for signal amplification.
    In the absence of avidin, the protein sensor will exit in a closed conformation which will prevent the HCA enzyme to catalyze the hydrolysis of nonfluorescent FLDA to strongly fluorescent FL product. In the presence of avidin, the protein will bind to biotin and generate steric effects which should open up the protein sensor. Under this circumstance, the affinity of sulfonamide and HCA is weakened and the signal amplification can thus occur.

    目錄 謝誌 i 摘要 ii Abstract iii 第一章 緒論 1 §1-1 蛋白質與輔酶 1 §1-1.1蛋白質 1 §1-1.2輔酶(coenzyme) 2 §1-2 蛋白質偵測 3 §1-2.1 酵素免疫分析法(enzyme-linked immunosorbent assay) 3 §1-2.2 西方墨點法(Western blot) 4 §1-2.3 質譜儀(masss spectrometry) 5 §1-3 訊號放大法 7 §1-4 蛋白質活性調控 8 §1-4.1 蛋白質磷酸化調節活性(protein phosphorylation regulate activity ) 8 §1-4.2 變構調節蛋白質活性(allosteric regulation protein activity) 9 §1-4.2 intrasteric調節蛋白質活性(intrasteric regulation protein activity) 11 §1-5 半合成探針 11 §1-6 實驗目標與動機 12 第二章文獻回顧與設計構想 13 §2-1 適配體蛋白質探針(Aptamer protein probe) 13 §2-2 金奈米適配體蛋白質探針(AuNPs aptamer protein probe) 15 §2-2 金奈米蛋白質探針(AuNPs protein probe) 17 第三章 探針之設計構想與製備技術 19 §3-1 探針設計構想 19 §3-2 探針合成策略 21 §3-2.1 生物選殖技術(cloning technology) 22 §3-3 蛋白標籤(protein tag) 23 §3-3.1 SNAP-tag 標記技術 23 §3-3.2 Halo-tag 標記技術 24 §3-4 人類碳酸酐II ( Human carbonic anhydrase II ) 25 第四章 實驗結果與討論 26 第五章 實驗結論 36 第六章 實驗部分 37 §6-1 一般實驗敘述 37 §6-2 化合物合成方法與光譜資料 38 參考文獻 86

    參考文獻
    1. Nelson DL, Cox MM, Lehninger's Principles of Biochemistry-W. H. Freeman and Company4th Ed, 2005.
    2. (a) Agarwal, P. K., Microb. Cell. Fact., 2006, 5, 1-12(b) Anfinsen, C. B.; Sci., 1973, 181, 223-230
    3. (a)Lukens, F. D. W., Diabetes, 1964, 13, 451-461(b) Pereira, S.; Marliss, E. B.; Morais, J. A.; Chevalier, S.; Gougeon, R., Diabetes, 2008, 57, 56-63
    4. György, P.; Melville , D. B.; Burk, D.; Vigneaud, V. U., Sci., 1940, 91, 243-245
    5. (a) Overvad, K.; Diamant, B.; Holm, L.; Hùlmer, G.; Mortensen, S.; Stender, S., Eur. J. Clin. Nutr., 1999, 53, 764-770 (b) Mattews, R. T.; Yang, L.; Browne, S.; Baik, M.; BEAL, M. F., Proc. Natl. Acad. Sci., 1998, 95 ,8892–8897. (c)Crane, F. L., J. Am. Coll. Nutr., 2001, 20, 591–598
    6. Waldrop, G. L.; Holden, H. M.; Maurice, M. S., Protein Sci., 2012, 21, 1597-1619
    7. Webb, M. E.; Marquet, A.; Mendel, R. R.; Rébeilléd, F.; Smith, A. G., Nat. Prod. Rep., 2007,24, 988-1008
    8. (a)Batchelor, R. H.; Sarkez, A. ; Cox, W. G.; Johnson, I., BioTechniques , 2007, 43, 503-507(b) Rogers, T. O.; Lichstein, H. C., J. Bacteriol., 1969, 100, 565-572(c) Holmberg, A.; Blomstergren, A.; Nord, O.; Lukacs, M.; Lundeberg, J.; Uhlén, M., Electrophoresis, 2005, 26, 501-510(d) Diamandis, E. P.; Christopoulos, T. K., Clin. Chem., 1991, 37, 625-636
    9. Dixon, S. C.; Knopf, K. B.; Figg, W. D., Pharmacol. Rev., 2001, 53, 73-92.
    10. (a)Engvall, E.; Jonsson, K.; Perlmann, P., Biochim. Biophys. Acta., 1971, 251, 427-434 (b) Lequin, R. M., Clin. Chem., 2005, 51, 2415–2418
    11. (a)Burnette, W. N., Anal. Biochem.,1981, 12, 195-203(b) Renart, J.; Reiser, J.; Stark, G. R., Proc Natl Acad Sci U S A., 1979, 76, 3116-3120
    12. Beavis, R. C.; Chait B. T., Anal. Chem., 1997, 63, 1193-1203
    13. (a)Tanaka, K.; Waki, H.; Ido, T.; Akita, S.; Yoshida, Y.; Yoshida, T., Rapid Commun. Mass Spectrom, 1988, 2, 151-153(b)Bergmann, G., Phys. Rev. Lett., 1984, 1 ,1-58(c) Brown, R. S..; Lennon, J. J., Anal. Chem., 1995, 67, 1998-2003
    14. (a)Arora, P. S..; Yamagiwa, H.; Srivastava, A.; Bolander1, M. E.; Sarkar, G., J. Orthop. Sci., 2005, 10, 160–166(b) Patrick H. O'Farrell, J. Biol. Chem., 1975, 250, 4007–4021
    15. (a)Zhu, L.; Anslyn, E. V., Angew. Chem. Int. Ed., 2006, 45, 1190-1196(b)Scrimin, P.; Prins, L. J., Chem. Soc. Rev., 2011, 40, 4488–4505
    16. Garrett, R.; Grisham, C., Biochemistry- Available Titles CengageNOW Series 4th Ed, 2008.
    17. Johnson, L. N., Biochem. Soc. Trans., 2009, 37, 627-641
    18. (a) Jaffe, E. K., Trends Biochem sci., 2005, 30, 490-497(b) Jaffe , E. K., Open Conf. Proc. J., 2010, 1, 1–6
    19. Gianneschi, N. C.; Nguyen , S. T.; Mirkin, C. A., J. Am. Chem. Soc., 2005, 127, 1644-1645
    20. Kobe, B.; Kemp, B. E., Nature, 1999, 402(6760), 373-376
    21. (a)Brun, M. A.; Tan, K. T.; Nakata, E.; Hinner, M. J.; Johnsson, K., J. Am. Chem. Soc., 2009, 131, 5873-5884(b) Brun, M. A.; Tan, K. T.; Griss, R.; Kielkowska, A.; Reymond, L.; Johnsson, K., J. Am. Chem. Soc., 2012, 134, 7676-7678
    22. Muir, T. W., Annu. Rev. Biochem., 2003, 72, 249–289
    23. Sambrook, J.; Russell, D. W., Molecular cloning- cold spring harbor laboratory press 3rd Ed, 1989.
    24. (a)Ellington, A. D.; Szostak, J. W., Nat., 1990, 346, 818-822(b) Turek, C.; Gold, L., Sci., 1990, 249,505-510
    25. Hosoda, K.; Matsuura, T.; Kita, H.; Ichihashi, N.; Tsukada, K.; Urabe, I.; Yomo, T., RNA, 2008, 14, 584.-592
    26. Xue, L.; Zhou, X.; Xing, D., Anal. Chem., 2012, 84, 3507−3513
    27. (a)Li, W.; Liu, Z. L.; Lin, H.; Nie, Z.; Chen, J. H.; Xu, X. H.; Yao, S.Z. Anal. Chem. 2010, 82, 1935−1941.(b) Niazov, T.; Pavlov, V.; Xiao, Y.; Gill, R.; Willner, I. Nano Lett. 2004, 4, 1683−1687
    28. (a)Higgins, L. S.; Besnier, C.; Kong, H. M. Nucleic Acids Res. 2001, 29, 2492−2501.(b) Zhang, Y.; Zhang, C. Y. Anal. Chem. 2012, 84, 224−231.
    29. Huang, Y.; Chen,J.; Zhao, S.; Shi, M.; Chen. Z. F.; Liang, H., Anal. Chem. 2013, 85, 4423−4430
    30. Daniel, M. C.; Astruc, D., Chem Rev, 2004, 104, 293
    31. Cao, X.; Ye, Y.; Liu, S., Anal. Biochem., 2011, 417, 1–16
    32. Qian, X.; Peng, X. H.; Ansari, D. O.; Yin-Goen, Q.; Chen,G. Z.; Shin, D. M.; Yang, L.; Young, A. N.; Wang, M. D.;Nie, S., Nat Bio- technol, 2008, 26, 83.
    33. Liu, J.; Lu, Y., J. Am. Chem. Soc. 2004, 126, 12298-12305
    34. Li, J.; Fu, H. E.; Wu, L. J.; Zheng, A. X.; Chen, G. N.; Yang, H. H., Anal. Chem., 2012, 84, 5309−5315
    35. Miranda, O. R.; Chen, H. T.; You, C. C.; Mortenson, D. E.; Yang, X. C.; Bunz , U. H. F.; Rotello, V. M., J. Am. Chem. Soc., 2010, 132, 5285–5289
    36. Saghatelian, A.; Guckian, K. M.; Thayer, D. A.; Ghadiri, M. R., J. Am. Chem. Soc., 2003, 125, 344-345
    37. Shih, P. M.; Liu, T. K.; Tan, K. T., Chem. Commun., 2013, 49, 6212-6214
    38. Terpe, K., Appl. Microbiol. Biotechnol., 2003, 60, 523-533
    39. (a)Natarajan1, A. T.; Vermeulen1, S.; Darroudi1, F.;, Valentine, M. B.; Brent, T. P.; Mitra, S.; Tano, K., Mutagenesis, 1992, 7 , 83-85.(b) Perugino, G.; Vettone, A.; Illiano, G.; Valenti, A.; Ferrara, M . C.; Rossi, M. ; Ciaramella, M., J. Biol. Chem., 2012, 287, 4222-4331
    40. Los, G. V.; Encell, L. P.; McDougall, M. G.; Hartzell, D. D.; Karassina, N.; Zimprich, C.; Wood, M. G.; Learish, R.; Ohana, R. F.; Urh, M.;Simpson, D.; Mendez, J.; Zimmerman, K.; Otto, P.; Vidugiris, G.; Zhu, J.;Darzins, A.; Klaubert, D. H.; Bulleit, R. F.; Wood, K. V., Acs. Chem. Bio., 2008, 3, 373-382
    41. (a) Supuran, C. T., Nat. Rev. Drug Discovery, 2008, 7, 168(b)Krishnamurthy, V. M.; Kaufman, G. K.; Urbach, A. R.; Gitlin, I.; Gudiksen, K. L.; Weibel, D. B.; Whitesides, G. M., Chem. Rev.,2008, 108, 946.
    42. Sjo¨ blom, B.; Polentaruttib, M.; Djinovic´-Carugo, K., Proc Natl Acad Sci, 2009, 106, 10609–10613
    43. Abbate, F.; Winum, J. Y.; B. V. L. Potter; Casin, A. i,; Montero, J. L.; Scozzafava, A.; Supurana, C. T., Bioorg., Med. Chem. Lett. , 2004, 14, 231–234
    44. Hlavacek, W. S. ;Posner, R. G.; Perelson , A. S., Biophys J., 1999, 76, 3031–3043
    45. 施柏銘,國立清華大學碩士論文,2012。
    46. 莊裕德,國立清華大學碩士論文,2013。

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