研究生: |
李珮甄 Li, Pei-Jhen |
---|---|
論文名稱: |
配位基導向拓印分子製備蛋白探針與蛋白間交互作用及受體標的之研究 Ligand-Assisted Imprinting Probes for the Fabrication of Protein Probes and Receptor Labeling Studies |
指導教授: |
林俊成
Lin, Chun-Cheng |
口試委員: |
陳玉如
Chen, Yu-Ju 林伯樵 Lin, Po-Chiao 陳貴通 Tan, Kui-Thong 王聖凱 Wang, Sheng-Kai |
學位類別: |
博士 Doctor |
系所名稱: |
理學院 - 化學系 Department of Chemistry |
論文出版年: | 2019 |
畢業學年度: | 107 |
語文別: | 中文 |
論文頁數: | 341 |
中文關鍵詞: | 蛋白質探針 、蛋白質-蛋白質交互作用 |
外文關鍵詞: | protein probe, protein-protein interaction |
相關次數: | 點閱:1 下載:0 |
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蛋白質和蛋白質間的交互作用廣泛地調控龐大的生物機制,包含細胞與細胞間黏合與辨識、細胞間訊息傳遞、病毒或細菌對細胞的傳染、產生免疫反應。然而,闡釋蛋白質和蛋白質間的交互作用的過程是艱難且耗時的,且經常無法顯示清楚的分析結果。尤其又以探討凝集素和醣蛋白間的作用力最為艱鉅,此乃由於醣體與凝集素間作用力為非共價、可逆的鍵結以及微弱親合力。
本論文基於配位基輔助拓印探針的方法,在此簡稱為”LIP”,而發展凝集素探針以用於後續探討凝集素與醣蛋白間之交聯作用;於此研究,先以植物性凝集素Ricinus communis agglutinin 120(RCA120)和B細胞上的跨膜受體cluster of differentiation-22(CD22)應用於第一代凝集素探針之模型蛋白以驗證此策略之可行性,再以recombinant human Siglec-7 Fc chimera protein (Siglec-7-Fc)做為第二代凝集素探針修飾之目標蛋白;LIP的整個架構主要利用amide bond formation化學有效地合成含有多功能基團小分子探針LIP,其中LIP的設計含有五個部分及其功能,以醣體做為配位基將小分子導向凝集素之碳水化合物鍵結位點,再以紫外光激發光敏感基diazirine,於凝集素表面形成共價鍵結,同時啟動光敏斷裂基團之異構化(E-Z isomerization)形成中間體,再以生物素(biotin) 做為純化基團之後,進一步觸發光敏斷裂基團的中間體斷裂,於結合位點上移除醣體和生物素,而將炔基建構於醣結合位點附近以利後續用於生物正交點擊化學反應(Bioorthogonal click chemistry),以用於合成不同種類之凝集素探針。
本論文以三官能基團探針(含有疊氮基團及光敏感基及生物素)、含疊氮基之環境敏感探針經由Copper(I)-catalyzed Alkyne-Azide Cycloaddition (CuAAC) 反應於炔基化的凝集素上進行修飾以建構凝集素探針,分別應用於凝集素-醣蛋白之交聯反應及免洗滌之HeLa細胞即時監控顯影,最後,我們將修飾炔基化的Siglec-7-Fc與含疊氮基之阿黴素(Doxorubicin)結合做為凝集素藥物,應用於癌細胞抑制實驗中,並藉由MTT assay分析HeLa細胞的活性,結果顯示Siglec-7-Fc-drug可抑制HeLa細胞生長,並以HEK 293細胞做為對照組,證明此凝集素藥物進入細胞之途徑首先為醣蛋白與凝集素之交互作用而進入。
於上述研究過程中,亦發展出以抗癌藥物博來黴素(Bleomycin)之化學結構上的甘露糖部分做為配位基,結合環境敏感小分子所形成之探針以研究醣體與MCF-7膜蛋白之交聯作用,並分別以配位基為甘露糖及半乳醣之環境敏感探針做為對照組,以證明博來黴素經由通過MCF-7膜上之受體進入細胞而非經由小分子擴散(diffusion)進入細胞。
Protein-protein interactions (PPIs) modulate many biological processes. However, elucidation of PPI events is notoriously difficult and time consuming and often yields complex and unclear results. Lectin-glycoprotein interactions are especially difficult to study due to the noncovalent nature of the interactions and inherently low binding affinities of proteins to glycan ligands on glycoproteins. Here, we report a “ligand-assisted imprinting probe” (LIP)-based approach to fabricate protein probes for elucidating protein-glycoprotein interactions. The LIP was designed with dual photoactivatable groups for introduction of a site-specific clickable alkyne handle proximal to the carbohydrate-binding pocket of the lectin, namely, Ricinus communis agglutinin 120, cluster of differentiation-22(CD22) and recombinant human Siglec-7 Fc chimera protein (Siglec-7-Fc). In a proof-of-principle study, alkynylated RCA120 was conjugated with a photoreactive diazirine crosslinker and an environment-sensitive fluorophore by a bioorthogonal click reaction for anchoring the glycoprotein ovalbumin in solution and detecting endogenously expressed glycoproteins on HeLa cells, respectively. An environmental sensor was also site-specifically conjugated on the surface of CD22 near the carbohydrate binding site for no-wash imaging of living HeLa cell. We anticipate that the fabrication of this protein probe will accelerate the discovery of novel PPIs.
Furthermore, we synthesized a second generation LIP for the fabrication of Siglec-7-Fc-drug conjugates via click reaction with azido-doxorubicin and application on the inhibition of HeLa cells viability through the analysis of MTT assay. To validate the Siglec-7-Fc-drug conjugates internalized into HeLa cells through interaction with glycoprotein on the highly expressed sialosides of HeLa cells membrane, HEK 293 cells with low expressed sialosides was used as a control and treated with Siglec-7-Fc-drug conjugates. The result displayed that the glycoprotein on HeLa cells have carbohydrate ligand to bind the carbohydrate binding site of Siglec-7-Fc and doxorubicin can be released in the HeLa cell to further inhibit the viability of cells.
In the application process of lectin probes, we also developed another kind of ligand-directed environmental probes. One of the ligand is the mannose part of bleomycin which is an anti-cancer drug. Other two probes are mannose and galactose as the ligands in separate. We apply these carbohydrate probes to investigate the bleomycin receptor on the membrane of MCF-7. This research result have revealed that there are some feasible receptors interacted with the carbohydrate of bleomycin to internalize into the MCF-7 cells rather than the cellular process by diffusion.
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