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研究生: 楊宸鳴
Yang, Chen-Ming
論文名稱: 分析 PA0262, PA1511 與 PA5266,三個可能與綠膿桿菌PAO1第六型分泌系統(二)相關的 VgrG 蛋白
Characterization of PA0262, PA1511, and PA5266, Three Putative VgrGs Associated with the Type VI Secretion System-II in Pseudomonas aeruginosa PAO1
指導教授: 張晃猷
Chang, Hwan-You
口試委員: 高茂傑
賴怡琪
學位類別: 碩士
Master
系所名稱: 生命科學暨醫學院 - 分子醫學研究所
Institute of Molecular Medicine
論文出版年: 2013
畢業學年度: 101
語文別: 中文
論文頁數: 82
中文關鍵詞: 綠膿桿菌第六型分泌系統VgrG
外文關鍵詞: pseudomonas aeruginosa, type six secretion system, VgrG
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  • 綠膿桿菌為一種常見院內感染病原菌,也常在肺纖維性囊腫病患造成慢性感染。革蘭氏陰性菌為雙層膜結構,因此演化出不同型的分泌系統以將作用蛋白輸送到胞外。綠膿桿菌 PAO1 株,具有三套第六型分泌系統的基因叢集,稱為 T6SS-I, -II, 與 -III。 VgrG 為第六型分泌系統主要的分泌蛋白,其結構與 T4 噬菌體的細胞穿刺構造非常相似。 PAO1 具有十個 vgrG 基因,其中何者與 T6SS-II 相關並不清楚。經由與其他綠膿桿菌基因體的比對,我們認為 PA1511、 PA0262 與 PA5266,很可能是 T6SS-II 的 VgrG 蛋白。利用 InterproScan 預測蛋白保留區域,發現 PA1511 與 PA0262 的羧基端具有一段功能未知的延伸區域,可能用以與真核細胞進行交互作用。本研究首先將帶有 vgrG 的表現載體轉染至真核細胞中,但發現細胞並沒有顯著的死亡。本研究也構築了 PA1511、 PA0262 與 PA5266 等 vgrG 基因剔除株,發現 vgrG 不會影響綠膿桿菌的表型,包括移動能力、酵素活性與菌落形態等。在模式植物之感染試驗中, vgrG 剔除株 ΔPA1511 與 ΔPA5266 的傷口範圍較野生株造成的為小。在免疫轉漬實驗中發現,以 M8 培養的野生株,會分泌蛋白 PA5266 與 Hcp2 至培養液中。本研究雖然未能直接證明這三個 VgrG 與第六型分泌系統相關,但提供了研究這些 VgrG 蛋白的重要基礎。


    Pseudomonas aeruginosa is a common nosocomial pathogen causing acute infections in immunocompromised patients and chronic infections in cystic fibrosis patients. Gram-negative bacteria, especially pathogens, have developed diversified secretion systems to deliver effector molecules through their complex double membrane structure. P. aeruginosa contains three gene clusters named T6SS-I, -II, and -III that can encode a type VI secretion system. The valine-glycine repeat protein G (VgrG), structurally similar with the complex puncturing device of T4 bacteriophage, is one of the proteins secreted by type VI secretion systems P. aeruginosa PAO1 contains 10 vgrG-like genes. While PA0091, PA0095, and PA2685 have been shown to be the VgrGs of T6SS-I, the VgrG associated with T6SS-II is less clear. Based on comparative genomic analysis, either PA1511, PA0262, or PA5266 could be the VgrG associated with T6SS-II. Protein domain analysis revealed that PA1511 and PA0262 contain a functionally unknown extended segment in the C-terminal region. Further cytotoxicity assay of PA1511 and PA0262 by transfecting the genes into cultured HCT-8 cells failed to detect any significant effects. This study then constructed the vgrG deletion strains and examined their biological properties. Among commonly assayed phenotypes, no significant effect could be observed resulting from the vgrG deletions. In contrast, cytotoxicity and virulence to Chinese cabbage leaves are reduced in the ΔPA1511 and ΔPA5266 mutants. Finally, this study demonstrated that PA5266 and Hcp2 are secreted when PAO1 was grown in M8 minimal medium. Although the exact VgrGs secreted by T6SS-II and their functions remain to be determined, this study has established a strong basis for future analysis of the three VgrGs.

    中文摘要 I Abstract II 誌謝 III 目錄 IV 圖目錄 VII 表目錄 IX 壹 前言 1 1.1 細菌分泌系統 1 1.2 第六型分泌系統的發現 3 1.3 第六型分泌系統的組成 6 1.4 綠膿桿菌 11 貳 材料與方法 12 2.1 菌株、質體和培養條件 12 2.2 胺基酸序列及保留區域分析 13 2.3 聚合酶鏈鎖反應 13 2.4 細胞轉染作用 14 2.4.1 構築質體 14 2.4.2 轉染作用 15 2.5 蛋白質表現與純化 15 2.6 同源重組突變法 17 2.6.1 構築質體 17 2.6.2 第一次同源重組 17 2.6.3 第二次同源重組 18 2.7 生長曲線測試 18 2.8 群體移動能力測試 18 2.9 泳動性測試 18 2.10 抽動運動性測試 19 2.11 溶血性測試 19 2.12 蛋白酶測試 19 2.13 螯鐵分子測試 20 2.14 菌落形態測試 20 2.15 綠膿菌素鑒定 21 2.16 綠膿菌素定量分析 21 2.17 螢光色素鑒定 22 2.18 細胞毒殺測試 22 2.19 模式植物之感染試驗 23 2.20 外分泌蛋白的沉澱分析 23 2.21 聚丙烯醯胺膠體電泳 24 2.22 胜肽合成製備抗體 25 2.23 免疫轉漬分析 25 參 結果 26 3.1 綠膿桿菌中的第六型分泌系統 26 3.2 蛋白功能區域分析 27 3.3 轉染 pLW10-vgrG 至人類結腸癌細胞 27 3.4 VgrG 蛋白的表現與純化 28 3.5 構築vgrG 剔除株 28 3.6 野生株與 vgrG 剔除株的生長曲線測試 29 3.7 剔除 vgrG 對於綠膿桿菌群體移動能力的影響 30 3.8 剔除 vgrG 對於綠膿桿菌泳動能力的影響 30 3.9 剔除 vgrG 對於綠膿桿菌抽動運動能力的影響 30 3.10 剔除 vgrG 對於綠膿桿菌溶血能力的影響 31 3.11 剔除 vgrG 對於綠膿桿菌酪蛋白酶活性的影響 31 3.12 剔除 vgrG 對於綠膿桿菌捕鐵分子的影響 31 3.13 剔除 vgrG 對於綠膿桿菌菌落形態的影響 32 3.14 剔除 vgrG 對於綠膿菌素分泌的影響 32 3.15 剔除 vgrG 對於螢光色素分泌的影響 33 3.16 綠膿桿菌各 vgrG 剔除菌株細胞毒殺測試 33 3.17 綠膿桿菌各 vgrG 剔除菌株模式植物之感染能力 34 3.18 免疫轉漬分析綠膿桿菌 vgrG 過度表現株中 VgrG 分泌情形 34 3.19 不同培養液對於野生株PAO1分泌 VgrG 及 Hcp2 蛋白的影響 34 肆 討論 36 伍 參考文獻 39 圖目錄 圖一、綠膿桿菌 PAO1 基因體內編碼第六型分泌系統的三個基因叢集 57 圖二、綠膿桿菌 VgrG 胺基酸序列比對 58 圖三、將綠膿桿菌PAO1中三個 VgrG - PA1511、PA0262 及PA5266 的胺基酸序列以 InterProScan 分析其保留區域 59 圖四、利用倒立式光學顯微鏡觀察轉染 pLW10-vgrG 的 HCT-8 細胞 60 圖五、VgrG-His6 tag 融合蛋白的表現與純化 61 圖六、構築剔除株的同源重組過程 62 圖七、質體 pEX18TC-1511UD 之構築 63 圖八、質體 pEX18TC-0262UD 之構築 64 圖九、質體 pEX18TC-5266UD 之構築 65 圖十、以 0.8% 膠體電泳確認剔除株 ΔPA1511 的聚合酶鏈鎖反應產物 66 圖十一、以 0.8% 膠體電泳確認剔除株 ΔPA0262 的聚合酶鏈鎖反應產物 67 圖十二、以0.8% 膠體電泳確認剔除株 ΔPA5266 的聚合酶鏈鎖反應產物 68 圖十三、綠膿桿菌各菌株的生長曲線測試 69 圖十四、綠膿桿菌各菌株的群體移動試驗 70 圖十五、綠膿桿菌各菌株的泳動性測試 71 圖十六、綠膿桿菌各菌株的抽動運動性測試 72 圖十七、綠膿桿菌各菌株的溶血能力測試 73 圖十八、綠膿桿菌各菌株的蛋白酶活性試驗 74 圖十九、綠膿桿菌各菌株的捕鐵分子偵測 75 圖二十、綠膿桿菌各菌株的菌落形態分析 76 圖二十一、綠膿桿菌各菌株綠膿菌素鑑定與定量分析 77 圖二十二、綠膿桿菌各菌株螢光色素鑑定 78 圖二十三、綠膿桿菌各菌株細胞毒殺能力測試 79 圖二十四、綠膿桿菌各菌株對白菜感染試驗 80 圖二十五、免疫轉漬分析綠膿桿菌各過度表現株的 VgrG 分泌情形 81 圖二十六、不同培養液對於野生株分泌 VgrG 及 Hcp 蛋白的影響 82 表目錄 表一、本實驗所使用的菌株、質體與細胞株 53 表二、本實驗所使用的引子 55

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