研究生: |
徐惠珠 |
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論文名稱: |
台灣北部山區植物葉表酵母菌的分類與鑑定 Identification and taxonomy of yeasts on the leaves in the mountain areas of northern Taiwan. |
指導教授: | 李清福 |
口試委員: | |
學位類別: |
碩士 Master |
系所名稱: |
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論文出版年: | 2009 |
畢業學年度: | 97 |
語文別: | 中文 |
論文頁數: | 117 |
中文關鍵詞: | 酵母菌鑑定 、子囊菌 、擔子菌 、隨機擴增多型性DNA 、核糖體RNA基因 |
外文關鍵詞: | yeasts identification, ascomycetous, basidiomycetous, random amplified polymorphism DNA, ribosomal RNA gene |
相關次數: | 點閱:3 下載:0 |
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2005年11月到2006年5月,在台灣北部七縣市採集72個葉片樣品,以二氯喃玫瑰紅氯黴素洋菜膠培養基 (dichloran rose-bengal chloramphenicol agar;DRBC) 及酸化之葡萄糖酵母麥芽抽出物洋菜膠培養基 (acidified dextrose-yeast extract-malt extract agar;AYMA) 同步分離葉片上的酵母菌。透過菌落形態的分析及顯微鏡的觀察,篩選出具有獨特性的酵母菌共268株。所有菌株再以M13為引子 (primer),利用隨機擴增多型性DNA (random amplified polymorphism DNA, RAPD) 指紋片段分析各菌株DNA電泳圖譜,每一種依圖譜差異各取其中一株為代表菌株,於72個樣品268菌株中共篩選出101株代表性酵母菌株。所有菌株先以尿素試驗 (urease test) 和重氮化合物藍試驗 (diazonium blue B test) 區分子囊菌 (Ascomycetous yeasts) 和擔子菌 (Basidiomycetous yeasts),再分別以細胞形態、菌絲生成、孢子特徵和生理生化試驗等傳統之鑑定法鑑定所有菌株。粗篩選後的菌株以NLI及NL4為引子,以聚合酶連鎖反應 (polymerase chain reaction,PCR) 合成出大單元 (large subunit) 核糖體之D1/D2區域並予定序,所有菌株序列於GenBank資料庫比對種名,同時比對生理形態特徵,鑑定出菌種種名。鑑定結果顯示:101株酵母菌中擔子菌包含 Bullera, Cryptococcus, Pseudozyma, Rhodotorula及Sporidiobolus五屬29種,共74株,子囊菌包含 Candida, Kazachstania, Kodamaea, Saccharomyces, Sympodiomyces及Wickerhamomyces 六屬19種,共27株,擔子菌佔總菌數的比例高達73.27%,其中以Cryptococcus (52.48 %) 最高。子囊菌佔26.73 %其中以 Candida (15.84 %) 為多數。101株菌株共計11屬48種,其中有4種新種,而48種當中又以 Cryptococcus flavescens (18.81 %) 所佔的比例最高。由以上結果顯示:台灣植物葉表的酵母菌以擔子菌為優勢菌種,菌種較子囊菌分布廣泛,多樣性較為豐富。
The aim of this dissertation is to explore the species diversity of yeasts distributed on leaves in Northern Taiwan and preserve the yeast bioresources. Seventy-two leaves samples, located in the mountain area of seven counties in northern Taiwan, were collected in this study. Two hundred and sixty-eight strains were isolated from these leaf samples with Dichloran Rose-Bengal Chloramphenicol Agar (DRBC) and acidified Glucose-Yeast extract-Malt extract Agar (AYMA). One hundred and one yeast strain were picked up from 268 strains by comparison of electrophoretic patterns of random amplified polymorphism DNA (RAPD) with M13 primer. All the yeast strains were classified into ascomycetous yeasts and basidiomycetous yeasts with Urease and Diazonium Blue B (DBB) tests, and followed by traditionally identification such as Morphological, physiological and biochemical characteristics. The identification was authenticated by sequences of the D1/D2 domain of the large subunit (LSU) rRNA gene. The identification results show that 74 out of 101 strains are basidiomycetous yeasts, including Bullera, Cryptococcus, Pseudozyma, Rhodotorula and Sporidiobolus; 27 out of 101 strains are ascomycetous yeasts, including Candida, Kazachstania, Kodamaea, Saccharomyces, Sympodiomyces and Wickerhamomyces. Seventy-three percent of the strains are basidiomycetous yeast, in which Cryptococcus strains are the most (52.48%). Twenty-seven percent of the strains are ascomycetous yeast, in which Candida strains are the most (15.84%). The 101 yeast strains were classified into 11 genus and 48 species, including 4 new species. Out of 48 species, Cryptococcus flavescens takes most percentage (18.81%). As the results, basidiomycetous yeast are predominant on leaf samples collected in this study, and the yeasts are more divergent than ascomycetous yeasts.
汪碧涵, 2000. 國科會專題研究計畫成果報告:臺灣海洋酵母菌之分離與分類學研究, NSC89-2320-B-031-002, 行政院國家科學委員會, 台北, 中華民國.
Andrighetto, C., Psomas, E., Tzanetakis, N., Suzzi, G., and Lombardi, A. 2000. Randomly amplified polymorphic DNA RAPD PCR for identification of yeasts isolated from dairy products. Lett. Appl. Microbiol. 30: 5-9.
Arias, C. R., Bums, J. K., Friedrich, L. .M., Goodrich, R. M., and Parish, M. E. 2002. Yeast species associated with orange juice: Evaluation of different method. Appl. Environ. Microbiol. 68: 1955-1961.
Gadaga, T. H., Mutukumira, A. N., and Narvhus, J.A. 2000. Enumeration and identification of yeasts isolated from Eimbabwean traditional fermented milk. Int. Dairy J. 10: 459-466.
Cadez, N., Raspor, P., de Cock, A. W. M., Boekhout, T., and Smith, M. Th. 2002. Molecular identification and genetic diversity with in species of the genera Hanseniaspora and Kloeckera. FEMS Yeast Res. 1: 279-289.
Cappa, F. and Cocconcelli, P. S. 2001. Identification of fung; from dairy products by means of 18S rRNA analysis Int. J. Food Mlcroblol. 69: 157-160.
Cocolin. L., Aggio, D., Manzano, M,. Cantoni, C., and Comi, G. 2002. An application of PCR-DGGE analysis to profile the yeast populations in raw milk. Int. Dairy Journal. 12: 407-411.
Couto, M. M. B., van der Vossen, J. M. B. M., Hofstra, H., and Huis in`t Veld, J. H. J. 1994. RAPD analysis: a rapid technique for differentiation of spoilage yeasts. Int. J. Food Microbiol. 24: 249-260.
Czemcka, D. and Rampal, P. 2002. Experimental effects of Saccharomyces boulardii on diarrhea pathogens. Microb. Inf. 4: 733-739.
Encinas, J. P., Lopez-Diaz, T. M., Garcia-Lopez, M. L., Otero, A., and Moreno, B. 2000. Meat Sci. 54: 203-208.
Fell, J. W. 1976. Yeasts in Oceanic regions. In: E.B.G. Jones(ed.). Recent Advances in Aquatic Mycology. Elek Science, London, pp. 93-124.
Fell, J. W., Boekhout, T., Fonseca, A., Scorzetti, G., and Satzell-Tallman, A. 2000. Biodicersiy and systematics of basidiomycetous yeasts as determined by large-subunit rDNA D1/D2 domain sequence analysis. Int. J. Syst. Evol. Microbiol. 50: 1351-1371.
reference to soil fungi. In W. Winterhoff, Ed., Fungi in Vegetation Science. Kluwer Academic Publishers, Dordrecht, The Netherlands, pp. 183-223.
Hagler, A. N. and Abeam, D. G. 1987. Ecology of aquatic yeasts. in: Environment. Academic Press, London, pp. 191-205.
Hamamoto, M. and Nakase, T. 2000. Phylogenetic analysis of the ballistoconidium-forming yeast genus Sporobolomyces based on 18S rDNA Sequence. Int. J. Syst. Evol. Microbio. 50:1373-1380.
Hamamoto, M., Nagaham, T., and Tamura, M. 2002. Systematic study of basidiomycetous yeasts-evaluation of the ITS regions of rDNA to delimit species of the genus Rhodosporidium. FEMS Yeast Res. 2: 409-413.
Heras-Vazquez, F. J. L., Mingorance-Cazorta, L., Clemente-Jimenez, J. M., and Rodnguez_Vico, F. 2003. Identification of yeast Species from orange fruit and juice by RFLP and sequence analysis of the 5.8S rRNA gene and the two internal transcribed spacers. FEMS Yeast Res. 3: 3-9.
Jain, P., Khan, Z. K., Bhatacharya, E., and Ranade, S. A. 2001. Variation in random amplified polymorphic DNA (RAPD) profiles specific to fluconazole-resistant and-sensitive strains of Candida albicans. 41: 113-119.
Kurtzman, C. P. and Fell, J. W. 1998. The Yeasts, A Taxonomic Study, 4th edn Elsevier, Amsterdam.
Kurtzman, C. P. and Blanz, P.A. 1998. Ribosomal RNA/DNA Sequence comparisons for assessing phylogenetic relationships. In The Yeasts, a taxonomic study. 4ed. eds. Kurtzman, C. P. and J. W. Fell. Elsevier Science, Amsterdam, The Netherlands, pp. 69-74.
Kurtzman, C. P. 1998. Nuclear DNA hybridization: Quantitation of close genetic relationships. In The Yeasts, a taxonomic study. 4ed. eds. Kurtzman, C. P. and J. W. Fell. Elsevier Science, Amsterdam, The Netherlands, pp. 63-68.
Lee, C. F., Lee, F. L., Hsu, W. H., and Hsu, W. H. 1994a. DNA reassociation and electrokaryotype study of some Candida species and synonym of Candida terebra, Candida entomaea, and Candida veronae. Caaadiaa Journal of Microbiology. 39: 864-867.
Lee, C. F., Lee, F. L., and Hsu, W. H. 1995. Syaonym of Candida methylic with Candida boidinii and of Candida methanophaga with Candida succiphila. International Journal of SystematicBacteriology. 44: 839-841.
Lee, F. L., Lee, C. F., Okada, S., Hsu, W. H., Uchimura, T., Komagata, K., and Kozaki, M. 1993. Candida galacta comb. nov., a new combination for Candida apis var. galacta, International Journal of SystematicBacteriology. 43: 183-184.
Lee, C. F., Lee, F. L., Hsu, W. H., and Phaff, H. J. 1994b. Arthroascus fermentans, a new yeast species isolated from soil in Taiwan. 44: 303-307.
Lee, F. L., Lee, C. F., Okada, S., Uchimura, T., and Kozaki, M. 1992a. Chemotaxonomic comparison of Pichia farinosa, Pichia sorbitophila and Candida cacaoi. Bulletin of the Japan Federation for culture Collection. 8(1): 71-78.
Lee, F. L., Lee, C. F., Okada, S., Hsu, W. H., and KoZaki, M. 1992b. Chemotaxonomic comparison of osmotolerant yeasts isolated from “inyu” (black soybean sauce) mash in Taiwan and “shoyu” (soybean sauce) mash in Japan. Bulletin of the Japan Federation for culture Collection. 8(1): 11-17.
Lehmann, P. F., Diming, L., and Lasker, B. A. 1992. Genotypic identification of species and strains with in the genus Candida by using random amplified polymorphic DNA. J. Clio. Microbiol. 30:3249-3254.
Lieckfeldt, E., Meyer, W., and Borner, J. 1993. Rapid identification and differentiation of yeasts by DNA and PCR fingerprinting. J. Basic Microbiol. 33: 413-426.
Lopez, V., Querol, A., Ramon, D., and Femandez-Espinar, M. T. 2001. A simplified procedure to analyse mitochondrial DNA from industrial yeasts. Int. J. Food Microbiol. 68: 75-81.
Moghaddas, J., Truant, A. L., Jordan, L., and Buckley, H. R. 1999. Evaluation of the RapID yeast Plus system for the identification of yeast. Diagn. Microbiol. Infect. Dis. 35: 271-273.
Phaff, H. J. and Starmer, W. T. 1987. Yeasts associated with plants, insects and soil. In: A. H. Rose and J. S. Hanison (Eds.), The Yeasts, 2nd edn., Vol. I, Biology of Yeasts. Academic Press, London, pp. 123-180.
Price, C. W., Fuson, G. B., and Phaff H. J. 1978. Genome comparison in yeast systematics: delimitation of species within the genera Schwanniomyces, Saccharomyces, Debaryomyces, Pichia. Microbiol. Rev. 42: 161-193.
Psomas, E. I., Fletouris, D. J., Litopoulou-Tzanetaki, E., and Tzanetakis, N. 2003. Assimilation of cholesterol by yeast strains isolated from infant faeces and feta cheese. J. Dairy Sci. 86: 3416-3422.
Pujol, C., Joly, S., Lockhart, S. R., Noel, S., Tibayrence, M., and Soil, D. R. 1997. Parity among the random amplified polymorphic DNA method, multilocus enzyme electrophoresis and Southern blot hybridization with the moderately repetitive DNA probe Ca 3 for fingerprinting Candida albicans. J. Clin. Microbiol. 35:2348-2358.
Romano, A., Casaregola, S., Torre, P., and Gaillardin, C. 1996. Use of RAPD and mithochondrial DNA RFLP for typing of Candida zeylanoides and Debaryomyces hansenii yeasts strains isolated from cheese. Syst. Appl. Microbiol. 19: 255-264.
Sancho, T., Gimenez- Jurado, G., Malfeito-Ferreira, M., and Lourtiro, V. 2000. Zymological indicators: a new concept applied to the detection of potential spoilage yeast species associated with fruit pulps and concentrates. Food Microbiol. 17: 613-624.
Sand, C. and Rennie, R. P. 1999. Comparison of three commercial systems for the identification of germ-tube negative yeast species isolated from Clinical specimens. Diagn. Microbiol. Infect. Dis. 33: 223-229.
Starmer, W. T., Ganter, P. F., Aberdeen, V., Lanchance, M. A., and Phaff, H. J. 1987. The ecotogicaJ role of killer yeasts in natural communities of yeasts Can. J. Microbiol. 33: 783-796.
Starmer, W. T., Peris, F., and Fontderila, A. 1986. The transmission of yeasts by Drosophila buzzati during courtship and matingAuim. Behav. 36: 1691-1695.
Theelen, , B., Silvestri, M., Gueho, E., van Belkum, A., and Boekhout, T. 2001. Identification and typing of Malassezia yeasts using amplified fragment length polymorphism (AFLP). Random amplified polymophic DNA (RAPD) and denaturing gradiend gel electrophoresis (DGGE). FEMS Yeast Res. 1: 79-86.
Vasdinyei, R. and Deak, T. 2003. Characterization of yeast isolates originating from Hungarian dairy products using traditional and molecular identification techniques. Int. J. Food Microbiol. 86: 123-130.
Welthagen, J. J. and Viljoen, B. C. 1997. The value of certain chemotaxonomic methods in the identification of food related yeasts. Food Microbiol. 14: 231-245.
Yarrow, D. 1998. Methods for the isolation, maintenance and identification of yeasts. In The Yeasts, a taxonomic study. 4th edn (Kurtzman, C. P. and J. W. Fell), pp. 77-102. Elsevier, Amsterdam.