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研究生: 張純鳳
Chang, Chun Feng
論文名稱: 設計與合成吲唑衍生物為北極光激酶抑制劑之研究
Design and Synthesis of Indazole-based Derivatives as Aurora Kinases Inhibitors
指導教授: 汪炳鈞
Uang, Biing Jiun
謝興邦
Hsieh, Hsing Pang
口試委員: 林俊成
Lin, Chun Cheng
王雯靜
Wang, WenChing
曾宇鳳
Tseng, Yu Jane
吳彥谷
Wu, Yen Ku
學位類別: 博士
Doctor
系所名稱: 理學院 - 化學系
Department of Chemistry
論文出版年: 2016
畢業學年度: 105
語文別: 中文
論文頁數: 392
中文關鍵詞: 吲唑北極光激酶激酶抑制劑
外文關鍵詞: Indazole, Aurora Kinases, Kinases Inhibitors
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  • 本論文主旨在設計與合成吲唑化合物為北極光激酶抑制劑,期望以此發展為抗癌標靶藥物。以ATP競爭抑制劑概念為基礎進行開發,首先利用子結構(sub-structure)進行分子庫搜尋,篩選出潛力化合物74為修飾目標,利用電腦輔助片段基礎設計引入丙烯醯胺片段得到化合物50a,再以循理性藥物設計方式,於吲唑骨架五號位置引入苯磺醯胺片段發展出先導化合物74,並從電腦輔助模型瞭解其結構與北極光激酶之間的作用力,接著建構先導化合物74之結構活性關係與類藥性質的改善用以提升癌細胞株抑制活性,最後,進行多靶點激酶抑制活性與北極光激酶家族選擇性抑制活性測試探討此吲唑系列對於激酶選擇性抑制的表現。


    This dissertation is concerned with the development of indazole-based derivatives as Aurora kinases inhibitors. Based on the concept of ATP competitive inhibitors, indazole skeleton was selected as a starting point. Utilizing our in-house database by sub-structure screening, hit compound 47 was identified as the initial hit which showed weak inhibition against Aurora A. Compound 50a was further synthesized by using in silico FBDD techniques and resulting in 10-fold potency improvement. Following by rational drug design, the carboxylic acid group extended from aniline at the C-3 of indazole core and phenylsulfonamide group at the C-5 of indazole core are newly identified to improve the potency as lead compound 74. SAR of lead compound 74 was constructed as well as the drug-like property was modified to enhance activity against cancer cell proliferation. Finally, kinases profiling and isoform selectivity were assayed and discussed through computer assisted docking model.

    中文摘要 i Abstract ii 謝誌 iii 目錄 iv 表目錄 x 圖目錄 xii 流程目錄 xvi 縮寫對照表 xviii 壹、緒論 1 1.1 前言 1 1.2 癌症治療 2 1.2.1 癌症化療藥物之分類 3 1.2.1.1 烷化劑 (Alkylating agents) 3 1.2.1.2 抗代謝藥物 (Antimetabolic agents) 4 1.2.1.3 干擾DNA複製相關藥物 5 1.2.1.4 微管蛋白抑制劑 (Microtubule inhibitor) 8 1.2.1.5 血管新生抑制劑 (Anti-angiogenesis inhibitor) 9 1.2.1.6 其他 10 1.2.2 癌症標靶治療藥物 11 1.2.2.1 抗血管增生之標靶藥物 11 1.2.2.2 癌細胞表面抗原之標靶藥物 12 1.2.2.3 癌細胞訊息傳遞路徑之標靶藥物 12 1.2.3 癌症治療藥物發展趨勢 14 1.3 蛋白質激酶 14 1.3.1 激酶活化區與ATP作用之區域 15 1.3.2 以激酶為標靶的抗癌藥物 16 1.4 激酶與細胞週期 (Cell cycle) 21 1.5 北極光激酶 (Aurora kinases) 24 1.5.1 北極光激酶和有絲分裂 (Mitosis) 25 1.5.1.1 北極光激酶A (Aurora A) 26 1.5.1.2 北極光激酶B (Aurora B) 27 1.5.1.3 北極光激酶C (Aurora C) 28 1.5.2 北極光激酶與癌症 28 1.5.3 北極光激酶抑制劑之發展 30 1.5.3.1 泛北極光激酶抑制劑 33 1.5.3.2 北極光激酶A選擇性抑制劑 34 1.5.3.3 北極光激酶B選擇性抑制劑 35 1.6 生藥所北極光激酶抑制劑之發展 36 1.6.1 呋喃駢嘧啶骨架為潛力化合物 37 1.6.2 高通量平行合成策略 39 1.6.3 北極光激酶抑制劑10的結構修飾與性質優化 40 1.6.4 電腦輔助藥物設計用於開發北極光激酶抑制劑 40 1.6.4.1 以構效關係開發喹唑啉衍生物為北極光激酶抑制劑 42 1.6.4.2 以高通量篩選北極光激酶抑制劑 43 1.6.4.3 電腦輔助藥物用於雙重抑制劑開發 44 貳、研究動機 46 2.1 新藥的開發 46 2.1.1 潛力化合物的尋找 47 2.1.2 先導化合物的優化策略 48 2.1.3 候選藥物的產出 49 2.2 吲唑(indazole)骨架衍生物為激酶抑制劑 51 2.2.1 吲唑骨架衍生物為JNK激酶抑制劑 52 2.2.2 吲唑骨架衍生物為Mps1激酶抑制劑 54 2.2.3 吲唑骨架衍生物為ITK激酶抑制劑 54 2.2.4 吲唑骨架衍生物為PLK4激酶抑制劑 56 2.2.5 吲唑骨架衍生物為各類激酶抑制劑 57 2.3 研究構想 60 2.4 生物活性測試分析 62 2.4.1 酵素活性分析 62 2.4.2 癌細胞株生長抑制活性測試 64 參、結果與討論 65 3.1 篩選潛力化合物(hit compound) 65 3.2 潛力化合物修飾策略 67 3.2.1 電腦輔助片段基礎藥物設計之方法 67 3.2.1 丙烯醯胺化合物50a的合成與結構修飾 70 3.2.2 丙烯醯胺化合物50a之結構活性關係 71 3.2.3 吲唑衍生物與北極光激酶之電腦輔助模型 74 3.2.4 潛力化合物結構修飾之結論 75 3.3 循理性藥物設計 76 3.3.1 循理性藥物設計的合成策略 78 3.3.2 循理性藥物設計之合成 78 3.3.3 循理性藥物設計之結構活性關係 82 3.3.4 吲唑骨架的5號位置官能基修飾與合成 83 3.3.5 吲唑骨架的5號位置修飾之結構活性關係 86 3.3.6 先導化合物74與北極光激酶之電腦輔助模型 88 3.4 先導化合物74結構修飾策略 89 3.4.1 先導化合物74結構修飾之合成 89 3.4.2 先導化合物74之結構活性關係 91 3.4.3 先導化合物74結構修飾之結論 94 3.5 先導化合物74性質優化策略 95 3.5.1 先導化合物74性質優化之合成 98 3.5.2 先導化合物74性質優化之生物活性分析 99 3.5.3 混成設計化合物之合成與結構活性關係 102 3.5.4 先導化合物74性質優化之結論 106 3.6 激酶選擇性的探討 107 3.6.1 多靶點激酶抑制活性分析 108 3.6.2 北極光激酶家族選擇性探討 110 肆、總結 115 伍、實驗部份 118 5.1 一般實驗方法 118 5.2 化合物之實驗步驟與光譜資料 120 陸、參考資料 199 附錄一 電腦輔助片段篩選藥物之化合物 210 附錄二 化合物之核磁共振光譜圖 220 附錄三 化合物74細胞膜穿透度試驗結果 316 附錄四 化合物之編號對照表 319 附錄五 生物活性測試分析方法 322 附錄六 口試投影片 325 附錄七 BPR2K吲唑系列化合物與生物活性 350 附錄八 發表之論文 358

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