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研究生: 許俼頔
Hsu, Yu-Di
論文名稱: 阿拉伯芥之14-3-3蛋白對質子傳送焦磷酸水解酶的調控分析
Regulation of H+-pyrophosphatase by 14-3-3 proteins from Arabidopsis thaliana
指導教授: 潘榮隆
Pan, Rong-Long
口試委員: 張晃猷
Chang, Hwan-You
劉姿吟
Liu, Tzu-Yin
黃蘊慈
Huang, Yun-Tzu
潘羿娟
Pan, Yih-Jiuan
學位類別: 博士
Doctor
系所名稱: 生命科學暨醫學院 - 生物資訊與結構生物研究所
Institute of Bioinformatics and Structural Biology
論文出版年: 2018
畢業學年度: 106
語文別: 英文
論文頁數: 54
中文關鍵詞: 焦磷酸水解酶質子傳送14-3-3蛋白阿拉伯芥
外文關鍵詞: V-PPase, Proton translocation, 14-3-3 proteins, Arabidopsis thaliana
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  • 質子傳送無機焦磷酸水解酶是植物液泡上維持酸鹼濃度穩定的關鍵蛋白。該酶透過代謝副產物焦磷酸的水解在細胞質和液泡腔之間產生質子梯度。 質子傳送焦磷酸水解酶在細胞蛋白質的調控已經引起許多工作者數十年的關注,但其機制仍不清楚。在此研究中,我們證明來自阿拉伯芥的質子傳送焦磷酸水解酶,AVP1,是液泡膜上14-3-3蛋白調控的目標蛋白,且分析了所有十二種亞型的14-3-3蛋白與AVP1之交互作用。發現在有14-3-3nu,-mu,-omicron和-iota的存在下,AVP1的酵素活性及其相關的質子傳送能力提高。而在這些14-3-3蛋白中,14-3-3mu對AVP1的酵素與氫離子傳送的偶合效率有最高刺激。再者14-3-3nu,-mu,-omicron和-iota在高濃度的焦磷酸下具保護AVP1的功能,可抑制高濃度自殺基質焦磷酸對AVP1的拮抗作用。而熱曲線則顯示當14-3-3omicron存在下提高了AVP1在高溫劣化的結構穩定性。此外我們發現14-3-3蛋白也可減輕鈉離子對AVP1的抑制,且確定了每個14-3-3蛋白對AVP1的結合位與模體基序。綜合以上研究,我們提出了一種工作模型來闡明14-3-3蛋白刺激AVP1酵素活性的交互作用。


    Plant vacuolar H+-transporting inorganic pyrophosphatase (V-PPase; EC 3.6.1.1) is a crucial enzyme that exists on the tonoplast to maintain pH homeostasis across the vacuolar membrane. This enzyme generates proton gradient between cytosol and vacuolar lumen by hydrolysis of a metabolic byproduct, pyrophosphate (PPi). The regulation of V-PPase at protein level has drawn attentions of many workers for decades, but its mechanism is still unclear. In this work, we show that AVP1, the V-PPase from Arabidopsis thaliana, is a target protein for regulatory 14-3-3 proteins at the vacuolar membrane, and all twelve 14-3-3 isoforms were analyzed for their association with AVP1. In the presence of 14-3-3nu, -mu, -omicron, and -iota, both enzymatic activities and its associated proton pumping of AVP1 were increased. Among these 14-3-3 proteins, 14-3-3mu shows the highest stimulation on coupling efficiency. Furthermore, 14-3-3nu, -mu, -omicron, and -iota exerted protection of AVP1 against the inhibition of suicidal substrate PPi at high concentration. Moreover, the thermal profile revealed the presence of 14-3-3omicron improves the structural stability of AVP1 against high temperature deterioration. Additionally, the 14-3-3 proteins mitigate the inhibition of Na+ to AVP1. Besides, the binding sites/motifs of AVP1 were identified for each 14-3-3 protein. Taken together, a working model was proposed to elucidate the association of 14-3-3 proteins with AVP1 for stimulation of its enzymatic activity.

    Abbreviations 6 Introduction 7 Materials and Methods 10 Isolation of microsomes and purification of AVP1 from Arabidopsis thaliana and yeast heterologous expression system 10 Expression and preparation of the 14-3-3 proteins 11 Split-ubiquitin membrane yeast two-hybrid technique 12 SDS-PAGE and Western blot analysis 13 Enzymatic assays and determination of PPi -dependent proton translocation 13 ELISA 14 Results 16 Interaction of 14-3-3 proteins with AVP1 16 The characteristics of 14-3-3 proteins association with AVP1 18 Identification of 14-3-3 proteins binding sites and motifs at AVP1 20 Discussion 22 References 26 Tables 32 Table 1 Kinetic parameters of AVP1 in the absence and presence of 14-3-3 proteins. 32 Table 2 Parameters of thermal effects on AVP1 in the absence and presence of 14-3-3 proteins. 33 Table 3 Cooperation of different species of 14-3-3 proteins in interaction with AVP1. 34 Figures 35 Fig. 1 Topology of H+-PPase from Arabidopsis thaliana. 35 Fig. 2 Screening of the binding of 14-3-3 proteins to AVP1 by split-ubiquitin membrane yeast two-hybrid technique. 36 Fig. 3 Binding of 14-3-3 proteins to AVP1. 37 Fig. 4 ELISA assay of 14-3-3 proteins on AVP1. 39 Fig. 5 PPi concentration curves of AVP1 in the absence and presence of 14-3-3 binding. 40 Fig. 6 Temperature profiles of AVP1 activity in the absence and presence of 14-3-3 proteins. 41 Fig. 7 Ion effects on AVP1 in the presence of 14-3-3 proteins. 42 Fig. 8 Identification of the binding sites or motifs at AVP1 to 14-3-3 proteins by split-ubiquitin membrane yeast two-hybrid technique. 43 Fig. 9 Activity ratio of AVP1 mutants in the presence of 14-3-3 proteins to their absence. 45 Fig. 10 The proposed model for the interaction of 14-3-3 proteins to AVP1. 47 Supplementary Materials 48 Table S1 The primers of GRFs cDNA for cloning of 14-3-3 proteins. 48 Table S2 The primers of baits used for MYTH technique. 49 Table S3 The primers of preys used for MYTH technique. 50 Table S4 The primers of the AVP1 and its mutants for cloning. 51 Table S5 Possible roles of essential residues involved in 14-3-3 proteins binding to AVP1. 53 Fig. S1 Sequence alignment of 14-3-3 proteins from Arabidopsis thaliana. 54

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