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研究生: 歐瓊雯
Chiung -Wen Ou
論文名稱: Knock down ADAR2基因對斑馬魚胚胎發育的影響
Effects of ADAR2 knock-down on the zebrafish embryogenesis
指導教授: 周姽嫄
Wei-Yuan Chow
口試委員:
學位類別: 碩士
Master
系所名稱: 生命科學暨醫學院 - 分子與細胞生物研究所
Institute of Molecular and Cellular Biology
論文出版年: 2004
畢業學年度: 92
語文別: 中文
論文頁數: 46
中文關鍵詞: 斑馬魚細胞凋亡
外文關鍵詞: zebrafish, ADAR2, RNA editing, apoptosis
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  • 中文摘要
    A-to-I RNA editing是真核生物將pre-mRNA adenosine 脫氨成inosine的後轉錄修飾,可增加基因產物的複雜性。ADARs (adenosine deaminase that act on RNA)是負責催化A-to-I (adenosine to inosine)的RNA editing 酵素,脊椎動物表現三種ADARs,ADAR1,ADAR2與ADAR3。先前本實驗室將按ADAR2 5’ 端序列設計的反訊息(anti-sense) morphonino寡核酸顯微注射入斑馬魚受精卵,干擾正常胚體ADAR2蛋白質的表現,觀察到胚體發育過程異常。異常的表現型包括眼睛較小、卵黃囊(yolk sac)發育不全、對觸碰不敏感、受精後72小時胚體發育逐漸遲緩、最遲於胚體發育七天內死亡。為進一步瞭解ADAR2反訊息morphonino寡核酸如何影響斑馬魚胚體的發育,以HuC免疫染色及zNav1.6 mRNA全覆式原位雜合染色追蹤ADAR2 基因被抑制後胚體24至72小時發育過程,發現胚體神經細胞的分佈、數量及表現時間點和野生種胚體不同。以crystallin αA進行mRNA全覆式原位雜合染色觀察水晶體發育,染色結果顯示ADAR2表現受抑制之36至72小時胚體的水晶體發育遲緩。以acridine orange染色與TUNEL assay追蹤細胞凋亡,染色結果顯示ADAR2 基因被抑制後16 hpf胚體發育過程之細胞凋亡無明顯異常,但在胚體發育20至36小時則偵測到過量的細胞凋亡。即時定量PCR分析顯示,ADAR2 基因被抑制後胚體發育16至36小時促細胞凋亡基因zBax表現量顯著增加,促細胞凋亡基因zBad與抗細胞凋亡基因zBcl-xl、zMcl-1a mRNA表現量則無明顯改變。本研究顯示ADAR2在斑馬魚神經細胞、眼睛的發育過程及早期發育過程裡細胞凋亡的調控扮演相當重要的角色。


    Abstract
    The A-to-I (adenosine to inosine) RNA editing catalyzing deamination of adenosines to inosines on pre-mRNA is a post-transcriptional modification mechanism which increases complexities of a gene product. Vertebrates express three kinds of ADARs (adenosine deaminase that act on RNA), ADAR1, ADAR2, and ADAR3. ADAR2 knock-down zebrafish embryos developed abnormally. The abnormal phenotypes include small eyes, yolk sac defects, touch insensitivity, locomotive defects, growth retardation, and death before 7 dpf. The temporal and spatial expression patterns of HuC and the sodium channel, zNav1.6, of wildtype and morphant zebrafish embryos were compared to delineate a possible involvement of ADAR2 in the neurogenesis. The numbers and distribution patterns of primary neurons in the morphant differed from those of the wildtype embryos. Comparisons of crystallin αA expression patterns between wildtype and morphant showed that the lens development might be retarded. TUNEL assay and acridine orange staining were performed to study the patterns of apoptosis in the embryos. Excessive and widespread apoptosis were detected in the morphant embryos between 20 to 36hpf. Quantitative RT-PCR analysis revealed that the expression level of pro-apoptotic zBax mRNA increased significantly in the 16-36 hpf morphants, whereas the mRNA levels of zBad, zBcl-xl and zMcl-1a remained the same between wildtype and morphant. These results suggest ADAR2 plays an essential role in the embryogenesis and is required for the developments of neuron, lens, and the regulation of apoptosis.

    目錄 Abstract 2 中文摘要 3 前言 4 材料與方法11 結果 17 討論 23 參考文獻 28 附表 33 附圖 35

    參考文獻
    Brenda L. Bass (2002). RNA editing by adenosine deaminases that act on RNA. Annu. Rev. Biochem. 71, 817-46.
    Burgess DL, Kohrman DC, Galt J, Plummer NW, Jones JM, Spear B, Meisler MH. (1995). Mutation of a new sodium channel gene, Scn8a, in the mouse mutant motor endplate disease. Nature Genet. 10, 461-5.
    Burns CM, Chu H, Rueter SM, Hutchinson LK, Canton H, Sanders-Bush E, Emeson RB. (1997). Regulation of serotonin-2C receptor G-protein coupling by RNA editing. Nature 387, 303-8.
    Chen CX, Cho DS, Wang Q, Lai F, Carter KC, Nishikura K. (2000). A third member of the RNA-specific adenosine deaminase gene family, ADAR3, contains both single- and double-stranded RNA binding domains. RNA 6, 755-67.
    Chen MC, Gong HY, Cheng CY, Wang JP, Hong JR, Wu JL. (2000). Cloning and characterization of a novel nuclear Bcl-2 family protein, zfMcl-1a, in zebrafish embryo. Biochem. Biophys. Res. Commun. 279, 725-31.
    Chen MC, Gong HY, Cheng CY, Wang JP, Hong JR, Wu JL. (2001). Cloning and characterization of zfBLP1, a Bcl-XL homologue from the zebrafish, Danio rerio. Biochim. Biophys. Acta. 1519, 127-33.
    Coen L, du Pasquier D, Le Mevel S, Brown S, Tata J, Mazabraud A, Demeneix BA. (2001). Xenopus Bcl-X(L) selectively protects Rohon-Beard neurons from metamorphic degeneration. Proc. Natl. Acad. Sci. 98, 7869-74.
    Cole LK, Ross LS. (2001). Apoptosis in the developing zebrafish embryo. Dev. Biol. 240, 123-42.
    Cory S, Huang DC, Adams JM. (2003). The Bcl-2 family: roles in cell survival and oncogenesis. Oncogene 22, 8590-607.
    Dragovich T, Rudin CM, Thompson CB. (1998). Signal transduction pathways that regulate cell survival and cell death. Oncogene 17, 3207-13.
    Furutani-Seiki M, Jiang YJ, Brand M, Heisenberg CP, Houart C, Beuchle D, van Eeden FJ, Granato M, Haffter P, Hammerschmidt M, Kane DA, Kelsh RN, Mullins MC, Odenthal J, Nusslein-Volhard C. (1996). Neural degeneration mutants in the zebrafish, Danio rerio. Development 123, 229-39.
    George CX, Samuel CE. (1999). Human RNA-specific adenosine deaminase ADAR1 transcripts possess alternative exon 1 structures that initiate from different promoters, one constitutively active and the other interferon inducible. Proc. Natl. Acad. Sci. 96, 4621-6.
    Grauso M, Reenan RA, Culetto E, Sattelle DB. (2002). Novel putative nicotinic acetylcholine receptor subunit genes, Dalpha5, Dalpha6 and Dalpha7, in Drosophila melanogaster identify a new and highly conserved target of adenosine deaminase acting on RNA-mediated A-to-I pre-mRNA editing. Genetics 160, 1519-33.
    Green DR, Reed JC. (1998). Mitochondria and apoptosis. Science 281 , 1309-12.
    Gross A, McDonnell JM, Korsmeyer SJ. (1999). BCL-2 family members and the mitochondria in apoptosis. Genes Dev. 13, 1899-911.
    Haffter, P., Granato, M., Brand, M., Mullins, M. C., Hammerschmidt, M., Kane, D. A., Odenthal, J., van Eeden, F. J. M., Jiang, Y.-J., Heisenberg, C.-P., Kelsh, R. N., Furutani-Seiki, M., Vogelsang, E., Beuchle, D., Schach, U., Fabian, C. and Nüsslein-Volhard, C. (1996). The identification of genes with unique and essential functions in the development of the zebrafish, Danio rerio. Development 123, 1-36.
    Hartner JC, Schmittwolf C, Kispert A, Muller AM, Higuchi M, Seeburg PH. (2004). Liver disintegration in the mouse embryo caused by deficiency in the RNA-editing enzyme ADAR1. J. Biol. Chem. 279, 4894-902.
    Hensey C, Gautier J. (1998). Programmed cell death during Xenopus development: a spatio-temporal analysis. Dev. Biol. 203, 36-48.
    Herbert A, Alfken J, Kim YG, Mian IS, Nishikura K, Rich A. (1997). A Z-DNA binding domain present in the human editing enzyme, double-stranded RNA adenosine deaminase. Proc. Natl. Acad. Sci. 94, 8421-6.
    Higuchi M, Single FN, Kohler M, Sommer B, Sprengel R, Seeburg PH. (1993). RNA editing of AMPA receptor subunit GluR-B: a base-paired intron-exon structure determines position and efficiency. Cell 75, 1361-70.
    Hsieh YC, Chang MS, Chen JY, Yen JJ, Lu IC, Chou CM, Huang CJ. (2003). Cloning of zebrafish BAD, a BH3-only proapoptotic protein, whose overexpression leads to apoptosis in COS-1 cells and zebrafish embryos. Biochem. Biophys. Res. Commun. 304, 667-75.
    Jacobson MD, Weil M, Raff MC. (1997). Programmed cell death in animal development. Cell 88, 347-54.
    Kerr JF, Wyllie AH, Currie AR. (1972). Apoptosis: a basic biological phenomenon with wide-ranging implications in tissue kinetics. Br. J. Cancer 26, 239-57.
    Kim CH, Ueshima E, Muraoka O, Tanaka H, Yeo SY, Huh TL, Miki N. (1996). Zebrafish elav/HuC homologue as a very early neuronal marker. Neurosci. Lett. 216, 109-12.
    Kimura SH, Ikawa M, Ito A, Okabe M, Nojima H. (2001). Cyclin G1 is involved in G2/M arrest in response to DNA damage and in growth control after damage recovery. Oncogene 25 3290-300.
    Knudson CM, Tung KS, Tourtellotte WG, Brown GA, Korsmeyer SJ. (1995). Bax-deficient mice with lymphoid hyperplasia and male germ cell death. Science 270, 96-9.
    Lamborghini JE. (1987). Disappearance of Rohon-Beard neurons from the spinal cord of larval Xenopus laevis. J. Comp. Neurol. 264, 47-55.
    Levine TD, Gao F, King PH, Andrews LG, Keene JD. (1993). Hel-N1: an autoimmune RNA-binding protein with specificity for 3' uridylate-rich untranslated regions of growth factor mRNAs. Mol. Cell Biol. 13, 3494-504.
    Liu J, Dalmau J, Szabo A, Rosenfeld M, Huber J, Furneaux H. (1995). Paraneoplastic encephalomyelitis antigens bind to the AU-rich elements of mRNA. Neurology 45, 544-50.
    Liu Y, Emeson RB, Samuel CE. (1999). Serotonin-2C receptor pre-mRNA editing in rat brain and in vitro by splice site variants of the interferon-inducible double-stranded RNA-specific adenosine deaminase ADAR1. J. Biol. Chem. 274 , 18351-8.
    Lomeli H, Mosbacher J, Melcher T, Hoger T, Geiger JR, Kuner T, Monyer H, Higuchi M, Bach A, Seeburg PH. (1994). Control of kinetic properties of AMPA receptor channels by nuclear RNA editing. Science 266, 1709-13
    Maas S, Rich A, Nishikura K. (2003)A-to-I RNA editing: recent news and residual mysteries. J. Biol. Chem.. 278, 1391-4.
    Melcher T, Maas S, Herb A, Sprengel R, Seeburg PH, Higuchi M. (1996). A mammalian RNA editing enzyme. Nature 379, 460-4.
    Melcher T, Maas S, Herb A, Sprengel R, Higuchi M, Seeburg PH. (1996). RED2, a brain-specific member of the RNA-specific adenosine deaminase family. J. Biol. Chem. 271, 31795-8.
    Motoyama N, Wang F, Roth KA, Sawa H, Nakayama K, Nakayama K, Negishi I, Senju S, Zhang Q, Fujii S, et al. (1995). Massive cell death of immature hematopoietic cells and neurons in Bcl-x-deficient mice. Science 1267, 1506-10.
    Oltvai ZN, Milliman CL, Korsmeyer SJ. (1993). Bcl-2 heterodimerizes in vivo with a conserved homolog, Bax, that accelerates programmed cell death. Cell 74, 609-19.
    Park HC, Hong SK, Kim HS, Kim SH, Yoon EJ, Kim CH, Miki N, Huh TL. (2000). Structural comparison of zebrafish Elav/Hu and their differential expressions during neurogenesis. Neurosci. Lett. 279, 81-4.
    Park HC, Kim CH, Bae YK, Yeo SY, Kim SH, Hong SK, Shin J, Yoo KW, Hibi M, Hirano T, Miki N, Chitnis AB, Huh TL. (2000). Analysis of upstream elements in the HuC promoter leads to the establishment of transgenic zebrafish with fluorescent neurons. Dev. Biol. 227, 279-93.
    Patterson JB, Samuel CE. (1995). Expression and regulation by interferon of a double-stranded-RNA-specific adenosine deaminase from human cells: evidence for two forms of the deaminase. Mol. Cell Biol. 15, 5376-88.
    Palladino MJ, Keegan LP, O'Connell MA, Reenan RA. (2000). A-to-I pre-mRNA editing in Drosophila is primarily involved in adult nervous system function and integrity. Cell 102, 437-49.
    Parquet MC, Kumatori A, Hasebe F, Morita K, Igarashi A. (2001). West Nile virus-induced bax-dependent apoptosis. FEBS Lett. 500, 17-24.
    Parsadanian AS, Cheng Y, Keller-Peck CR, Holtzman DM, Snider WD. (1998). Bcl-xL is an antiapoptotic regulator for postnatal CNS neurons. J. Neurosci. 18, 1009-19.
    Paul,M.S. and Bass,B.L. (1998). Inosine exists in mRNA at tissue-specific levels and is most abundant in brain mRNA. EMBO J., 17, 1120-1127.
    Po Kwok Chan, Shuk Han Cheng. (2003). Cadmium-induced ectopic apoptosis in zebrafish embryos. Arch. Toxicol. 77, 69-79
    Polson AG, Bass BL, Casey JL. (1996). RNA editing of hepatitis delta virus antigenome by dsRNA-adenosine deaminase. Nature 380, 454-6.
    Purves D, Augustine GJ. , Fitzpatrick D, Katz LC., Lamantia AS, McNamara JO. (1997) Neuroscience G-12
    Qingde Wang, *Peter J. O’Brien, Chun-Xia Chen, Dan-Sung C. Cho, John M. Murray, and Kazuko Nishikura (2000). Altered G Protein-Coupling Functions of RNA Editing Isoform and Splicing Variant Serotonin2C Receptors. J. Neurochem. 74, 1290-300
    Raff MC, Barres BA, Burne JF, Coles HS, Ishizaki Y, Jacobson MD. (1992). Programmed cell death and the control of cell survival: lessons from the nervous system. Science 262, 695-700.
    Raman IM, Sprunger LK, Meisler MH, Bean BP. (1997). Altered subthreshold sodium currents and disrupted firing patterns in Purkinje neurons of Scn8a mutant mice. Neuron 19, 881-91.
    Reenan RA. (2001). The RNA world meets behavior: A-->I pre-mRNA editing in animals. Trends Genet. 17, 53-6.
    Ribera AB, Nusslein-Volhard C. (1998). Zebrafish touch-insensitive mutants reveal an essential role for the developmental regulation of sodium current. J. Neurosci. 18, 9181-91.
    Ross AJ, Waymire KG, Moss JE, Parlow AF, Skinner MK, Russell LD, MacGregor GR. (1998). Testicular degeneration in Bcl-w deficient mice. Nature Genet. 18, 251-6.
    Rueter SM, Dawson TR, Emeson RB. (1999). Regulation of alternative splicing by RNA editing. Nature 399, 75-80.
    Runkle S, Hill J, Kantorow M, Horwitz J, Posner M. (2002). Sequence and spatial expression of zebrafish (Danio rerio) alphaA-crystallin. Mol. Vis. 8, 45-50.
    Schaller KL, Krzemien DM, Yarowsky PJ, Krueger BK, Caldwell JH (1995). A novel, abundant sodium channel expressed in neurons and glia. J. Neurosci. 15, 3231-42.
    Smith HC, Gott JM, Hanson MR. (1997). A guide to RNA editing. RNA 10, 1105-23.
    Sommer B, Kohler M, Sprengel R, Seeburg PH. (1991). RNA editing in brain controls a determinant of ion flow in glutamate-gated channels. Cell 67, 11-9.
    Sommer B, Kohler M, Sprengel R, Seeburg PH. (1991). RNA editing in brain controls a determinant of ion flow in glutamate-gated channels. Cell 67, 11–19
    Wakamatsu Y, Weston JA. (1997). Sequential expression and role of Hu RNA-binding proteins during neurogenesis. Development 124, 3449-60.
    Wang Q, Khillan J, Gadue P, Nishikura K. (2000). Requirement of the RNA editing deaminase ADAR1 gene for embryonic erythropoiesis. Science 290, 1765-8.
    Stefan Maas, Alexander Rich (2000). Changing genetic information through RNA editing. BioEssays 22, 790-802.
    Svoboda KR, Linares AE, Ribera AB. (2001). Activity regulates programmed cell death of zebrafish Rohon-Beard neurons. Development 128, 3511-20.
    Tonkin LA, Saccomanno L, Morse DP, Brodigan T, Krause M, Bass BL. (2002). RNA editing by ADARs is important for normal behavior in Caenorhabditis elegans. EMBO J. 21, 6025-35.
    Tsai CW, Tseng JJ, Lin SC, Chang CY, Wu JL, Horng JF, Tsay HJ. (2001). Primary structure and developmental expression of zebrafish sodium channel Na(v)1.6 during neurogenesis. DNA Cell Biol. 20, 249-55.
    Vaux DL, Korsmeyer SJ. (1999). Cell death in development. Cell 96, 245-54.
    Veis DJ, Sorenson CM, Shutter JR, Korsmeyer SJ. (1993). Bcl-2-deficient mice demonstrate fulminant lymphoid apoptosis, polycystic kidneys, and hypopigmented hair. Cell 75, 229-40.
    Wang Q, Miyakoda M, Yang W, Khillan J, Stachura DL, Weiss MJ, Nishikura K. (2004). Stress-induced apoptosis associated with null mutation of ADAR1 RNA editing deaminase gene. J. Biol. Chem. 279, 4952-61.
    Williams JA, Barrios A, Gatchalian C, Rubin L, Wilson SW, Holder N. (2000). Programmed cell death in zebrafish rohon beard neurons is influenced by TrkC1/NT-3 signaling. Dev. Biol. 226, 220-30.
    Wong SK, Sato S, Lazinski DW. (2001). Substrate recognition by ADAR1 and ADAR2. RNA 7, 846-58.
    Yamashita M. (2003). Apoptosis in zebrafish development. Comparative Biochemistry and Physiology Part B: Biochemistry and Molecular Biology 136, 731-42.

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