台灣出芽短梗黴屬之分類、親緣關係及親緣地理研究

簡易檢索 / 詳目顯示

回結果列表

研究生：	陳思妧 CHEN, Sz-Yuan
論文名稱：	台灣出芽短梗黴屬之分類、親緣關係及親緣地理研究 Taxonomy, phylogeny and phylogeography of Aureobasidium species collected from Taiwan.
指導教授：	李清福 Lee, Ching-Fu
口試委員:	楊樹森 Yang, Shu-Sen 劉桂郁 Liou, Guey-Yuh 汪碧涵 Wang, Pi-Han
學位類別：	碩士 Master
系所名稱：	南大校區系所調整院務中心 - 應用科學系所 Department of Applied Science
論文出版年：	2018
畢業學年度：	106
語文別：	中文
論文頁數：	200
中文關鍵詞：	出芽短梗黴屬、基因序列、親緣樹狀圖、親緣地理
外文關鍵詞：	Aureobasidium, genome, sequence, phylogenetic, tree, phylogeography
相關次數：	點閱：3 下載：0
分享至:	分享至facebook 分享至twitter

查詢本校圖書館目錄查詢臺灣博碩士論文知識加值系統勘誤回報

本實驗針對台灣北部、中部、南部、東部、台灣離島所分離之Aureoabsidium屬菌種進行鑑定及探討不同菌種間之親緣關係，藉此了解Aureobasidium屬之物種與基因多樣性。本研究針對本實驗室自2005年至2016年台灣各地區所採集自紅樹林區、濕地及山區之植物、土壤、菇類以及海水等，共215個樣本，包含192個植物樣本、7個土壤樣本、11個海水樣本及5個菇類樣本，共431株Aureobasidium菌株。並比較採集自中國54個植物樣本及俄羅斯4個植物樣本及1個土壤樣本所分離出122株Aureoabsidium菌株。以上共553株Aureobasidium菌株利用傳統鑑定及分子鑑定方法進行菌種確認，並進行分類及親緣關係研究。藉由核醣體大單元D1/D2區域序列繪製親緣關係樹狀圖，進行初步分群，共可分為7群，各群依不同樣本來源挑選代表性菌株共145株，進行多基因親緣關係分析，包括核醣體外轉錄區間序列 (Internal transcribed spacers, ITS)、β-微管蛋白 (β-tubulin, β-tub)、轉錄延長因子 (Translation elongation factor-1α, EF1-α) 等基因或DNA片段。結果顯示：145株Aureobasidium繪製多基因序列串聯之親緣關係可區分為12群12種，另有4個種各別獨立一群一種，各次群之基因序列差異可達種間差異層級，分別界定為種，共界定20個種，除原被認定之十二種外，Aureoabsidium melanogenum, Aureoabsidium namibiae, Aureoabsidium leucospermi, Aureoabsidium subglaciale, Aureoabsidium proteae, Aureoabsidium pullulans, Aureoabsidium iranianum, Aureoabsidium thailandense, Aureobasidium caulivorum, Aureobasidium microstictum, Aureobasidium lini, Aureobasidium mangrovei，其餘各種級層菌株輔以生理試驗及形態觀察，鑑定出八新種，其模式菌株 (type strain) 分別為Aureoabsidium datongiae SJ15L09T, Aureoabsidium wufongiae FN12L05T, Aureoabsidium taoyuaniae GY7L10T, Aureoabsidium guansiensis SJ8L08T, Aureoabsidium tainaniae BJ65L31T, Aureoabsidium siouliniae SF3L02T, Aureoabsidium taichungensis HM11L27T, Aureoabsidium yuchihensis SJ5L10T，本研究將針對各新種分別進行描述。另外本實驗取53株A. melanogenum以多基因序列進行親緣地理探討，分為41種基因型，由親緣關係樹狀圖結果顯示各基因單型彼此間沒有形成明顯分支，且親緣遠近關係沒有與地理位置呈現明顯關係。

The aim of this study is to isolate, identify and investigate species and genetic diversity and phylogenetic relationship of species in the genus Aureobasidium isolated from Taiwan. Four handred and thirty-one strains of the genus Aureobasidium isolated from 215 samples of plants, soil, mushrooms, water in Taiwan were during 2005-2016. We investigated genetic diversity of the 431 strains of the genus Aureobasidium from Taiwan with the 122 strains from China and Russia. Phylogenetic analysis Based on the D1/D2 domain of the large subunit (LSU) showed 553 strains could be clustered into 7 clades. Furthermore, representative 145 strains of 553 strains were authenticated by sequences of multiple genes including Internal transcribed spacers (ITS), EF1-α (Translation elongation factor 1-α) and β-tubulin. Finally, 145 strains were classified into 12 clades in the phylogenetic tree based on the four genes, showing the strains could be identified 20 distinct species, including twelve currently recognized species, Aureoabsidium melanogenum, Aureoabsidium namibiae, Aureoabsidium leucospermi, Aureoabsidium subglaciale, Aureoabsidium proteae, Aureoabsidium pullulans, Aureoabsidium iranianum, Aureoabsidium thailandense, Aureobasidium caulivorum, Aureobasidium microstictum, Aureobasidium lini, Aureobasidium mangrovei, and eight tentative novel species distinctly different from currently recognized species Aureoabsidium datongiae SJ15L09T, Aureoabsidium wufongiae FN12L05T, Aureoabsidium taoyuaniae GY7L10T, Aureoabsidium guansiensis SJ8L08T, Aureoabsidium tainaniae BJ65L31T, Aureoabsidium siouliniae SF3L02T, Aureoabsidium taichungensis HM11L27T, Aureoabsidium yuchihensis SJ5L10T. Additionally, representative 53 strains of A. melanogenum were analyzed of phylogenetic based on the phylogenetic tree with multiple gene sequences. The results indicated that there was no significant correlation between haplotype of A. melanogenum and its geographic location.

摘要…………………………………………………………………………………………………I
Abstract………………………………………………………………………………………………II
誌謝辭………………………………………………………………………………………………III
目錄………………………………………………………………………………………………IV
表目錄………………………………………………………………………………………………X
圖目錄………………………………………………………………………………………………XI
壹、前言……………………………………………………………………………………1-2
貳、前人研究………………………………………………………………………………3-15
一、Aureobasidium 屬的分類…………………………………………………………………3
二、Aureobasidium 屬的生長特徵……………………………………………………………4
(一) 巨觀…………………………………………………………………………………4
(二) 細胞微觀形態………………………………………………………………………5
三、Aureobasidium 屬的生態…………………………………………………………………5
(一) Aureobasidium 棲居環境與基質……………………………………………………5
(二) Aureobasidium 菌種與環境關係……………………………………………………5
1. 腐生菌……………………………………………………………………………6
2. 植物內生菌………………………………………………………………………6
3. 植物病原菌…………………………………………………………………6
4. 伺機性人類病原菌……………………………………………………………6
四、Aureobasidium 屬的致病性………………………………………………………………6
(一) 病原菌………………………………………………………………………………6
1. 黑色真菌症………………………………………………………………………6
2. 真菌敗血症……………………………………………………………………7
(二) 病原與症狀…………………………………………………………………………7
1. 人類感染之原因與徵狀…………………………………………………………7
2. 植物感染…………………………………………………………………………8
五、Aureobasidium 屬的應用…………………………………………………………………8
(一) 普魯藍多醣的生產…………………………………………………………………8
(二) 抗菌物質的生產……………………………………………………………………9
1. 抗生素……………………………………………………………………………9
2. 營養及空間競爭模式…………………………………………………………10
3. 胞外分解性酵素………………………………………………………………11
(三) 黑色素的生產與應用……………………………………………………………11
(四) 生物柴油的生產與應用…………………………………………………………12
(五) 聚蘋果酸的生產與應用…………………………………………………………12
(六) 單細胞蛋白 (single cell protein, SCP) ………………………………………12
六、親緣地理學……………………………………………………………………………13
(一) 研究與發展………………………………………………………………………13
(二) 分析方法…………………………………………………………………………13
1. 網狀支系分析…………………………………………………………………13
2. 歧異度分析……………………………………………………………………13
(1) 核苷酸多樣性……………………………………………………………13
(2) 基因單型多樣性………………………………………………………13
3. 中性理論………………………………………………………………………13
(三) 微生物在親緣地理上的研究……………………………………………………14
參、材料與方法……………………………………………………………………………16-33
一、藥品………………………………………………………………………………………16
二、培養基……………………………………………………………………………………16
(一) 葡萄糖酵母麥芽抽出物洋菜膠培養基…………………………………………16
(二) 酸化之葡萄糖酵母麥芽抽出物洋菜膠培養基…………………………………16
(三) 二氯喃玫瑰紅氯黴素洋菜膠培養基……………………………………………16
(四) 馬鈴薯葡萄糖洋菜膠培養基……………………………………………………16
(五) 麥芽抽出物洋菜膠培養基………………………………………………………16
(六) 抗生素之葡萄糖酵母麥芽抽出物培養基………………………………………17
三、器材………………………………………………………………………………………17
四、儀器………………………………………………………………………………………17
五、研究方法…………………………………………………………………………………18
(一) 菌株來源………………………………………………………………………18
(二) 菌株分離與純化…………………………………………………………………20
1. 直接分離及純化………………………………………………………………20
2. 增殖分離及純化………………………………………………………………20
3. 鏡檢篩選與純化………………………………………………………………20
(三) 菌種保存…………………………………………………………………………21
(四) DNA 抽取…………………………………………………………………………21
(五) DNA 指紋分析……………………………………………………………………21
1. 聚合酶連鎖反應………………………………………………………………21
2. DNA 膠體電泳…………………………………………………………………22
3. 菌株篩選………………………………………………………………………22
(六) 菌種分子鑑定……………………………………………………………………22
(七) 形態觀察…………………………………………………………………………23
1. 巨觀型態………………………………………………………………………24
2. 微觀型態…………………………………………………………………24
(八) 生理生化試驗…………………………………………………………………25
1. 菌液配製………………………………………………………………………25
2. 固態培養法……………………………………………………………………25
3. 液態培養法……………………………………………………………………25
4. 發酵試驗………………………………………………………………………25
5. 碳源利用性試驗………………………………………………………………25
6. 氮源利用性試驗………………………………………………………………25
7. 溫度試驗………………………………………………………………………26
8. 抗生素耐性試驗………………………………………………………………26
9. 生化試驗………………………………………………………………………28
(1) 澱粉生成能力試驗………………………………………………………28
(2) 產酸能力試驗……………………………………………………………28
(3) 分解尿素能力試驗………………………………………………………28
(4) 細胞壁染色試驗…………………………………………………………28
10. 其他試驗………………………………………………………………………28
11. 觀察與紀錄方法………………………………………………………………28
(九) 親緣關係分析……………………………………………………………………30
1. 序列排序………………………………………………………………………30
2. 親緣關係分析…………………………………………………………………30
(十) 親緣地理分析……………………………………………………………………30
1. 遺傳變異分析……………………………………………………………30
(1) 歧異度分析………………………………………………………………30
(2) 中性理論…………………………………………………………………31
2. 親緣關係分析…………………………………………………………………32
肆、結果與討論………………………………………………………………………………34-157
一、分子親緣關係分析與物種界定…………………………………………………………34
(一) 依據D1/D2 序列進行Aureobasidium 菌株之支群劃分…………………………34
(二) 依據ITS 序列進行Aureobasidium 菌株之支群劃分……………………………36
(三) 多基因序列之Aureobasidium 菌種親緣關係……………………………………55
二、菌種鑑定結果……………………………………………………………………………67
(一) 序列比對…………………………………………………………………………67
(二) 分子生物鑑定結果………………………………………………………………67
(三) 形態觀察…………………………………………………………………………75
(四) 生理生化試驗……………………………………………………………………103
三、親緣地理分析……………………………………………………………………………108
(一) A.melanogenum 之核苷酸鹼基組成分析………………………………………108
(二) 遺傳變異分析……………………………………………………………………108
1. 歧異度分析……………………………………………………………………108
2. 中性理論………………………………………………………………………108
(三) 親緣分析…………………………………………………………………………109
四、菌種描述…………………………………………………………………………………112
(一) 新物種描述………………………………………………………………………112
1. Aureobasidium datongiae………………………………………………………112
2. Aureobasidium wufongiae………………………………………………………112
3. Aureobasidium taoyuaniae……………………………………………………112
4. Aureobasidium guansiensis……………………………………………………113
5. Aureobasidium tainaniae……………………………………………………113
6. Aureobasidium siouliniae……………………………………………………113
7. Aureobasidium taichungensis…………………………………………………113
8. Aureobasidium yuchihensis……………………………………………………114
(二) 新物種特性說明…………………………………………………………………114
1. Description of Aureobasidium datongiae sp. nov.………………………………114
2. Description of Aureobasidium wufongiae sp. nov.……………………………115
3. Description of Aureobasidium taoyuaniae sp. nov.……………………………116
4. Description of Aureobasidium guansiensis sp. nov.……………………………117
5. Description of Aureobasidium tainaniae sp. nov.………………………………118
6. Description of Aureobasidium siouliniae sp. nov.………………………………119
7. Description of Aureobasidium taichungensis sp. nov.…………………………120
8. Description of Aureobasidium yuchihensis sp. nov.……………………………121
伍、結論………………………………………………………………………………………124
陸、參考文獻…………………………………………………………………………………125
附錄一、本實驗所使用之出芽短梗黴菌株…………………………………………………139
附錄二、本實驗所使用之藥品清單……………………………………………………………155
附錄三、出芽短梗黴屬各株之生理生化試驗結果……………………………………………156
附錄四、A. melanogenum 基因單型在核糖體大單元體D1/D2 區域序列之多型性位點……170
附錄五、A.melanogenum 基因單型在核糖體內轉錄間隔ITS 區域序列之多型性位點………172
附錄六、A.melanogenum 基因單型在β-微管蛋白β-tub 區域序列之多型性位點……………174
附錄七、A.melanogenum 基因單型在轉錄延長因子EF1-α 區域序列之多型性位點…………187
                                

李彥螢（2010）。臺灣高山湖泊肥胖蕩鏢水溞（足綱：哲水溞目) 族群遺傳結構與親緣地理
學分析（碩士論文）。
黃敬堯（2013）。台灣Candida tropicalis菌株之族群結構與親緣地理（碩士論文）。
龐飛、許清曉、梁修豪、陳宜君（2009）。人畜共通傳染病臨床指引第二版第五十三章: 黑色真菌症。台北：行政院。
Aho R. 1983. Saprophytic fungi isolated from the hair of domestic and laboratory animals with suspected dermatophytosis. Mycopathologia. 83: 65-73.
Alban S., Schauerte A., Franz G. 2002. Anticoagulant sulfated polysaccharides: part I. Synthesis and structure-activity relationship of new pullulan sulfates. Carbohydrate Polymers. 47:267-276.
al-Hedaithy S.S., Jamjoom Z.A., Saeed E.S. 1988. Cerebral phaeohyphomycosis caused by Fonsecaea pedrosoi in Saudi Arabia. APMIS. Supplement. 3: 94-100.
Andrews J.H., Spear R.N., Nordheim E.V. 2002. Population biology of Aureobasidium pullulans on apple leaf surface. Canadian Journal of Microbiology. 48: 500-513.
Arnaud G. 1918. Les Astérinées. Annales de l'École Nationale d'Agriculture de Montpellier. 16:1-288.
Arzanlou M., Khodaei S. 2012. Aureobasidium iranianum, a new species on bamboo from Iran. Microsphere. 3: 404-408.
Avise J.C., Arnold J., Ball R.M., Bermingham E., Lamb T., Neigel J.E., Reeb C.A., Saunders N.C. 1987. Intraspecific Phylogeography: The Mitochondrial DNA Bridge Between Population Genetics and Systematics. Annual Review of Ecology, Evolution, and Systematics. 18: 489-522.
Baas-Becking L.G.M. 1934. Geobiologie of inleiding tot de milieukunde. Hague, Netherlands: W.P. Van Stockum & Zoon. Baker F., Nasr H. 1947. VII.-MICROSCOPY IN THE INVESTIGATION OF STARCH AND CELLULOSE BREAKDOWN IN THE DIGESTIVE TRACT. Journal of Microscopy. 67: 27-42.
Bauer R. 1938. Physiology of Dematium pullulans de Bary. Zentralbl Bacteriol Parasitenkd Infektionskr Hyg Abt 2, 98: 133-167.
Bautista-Rosales P.U., Calderon-Santoyo M., Servín-Villegas R., Ochoa-Álvarez N.A., Ragazzo-Sánchez J.A. 2013. Action mechanisms of the yeast Meyerozyma caribbica for the control of the phytopathogen Colletotrichum gloeosporioides in mangos. Biological control. 65: 293-301.
Beijerinck M.W. 1913. De infusies en de ontdekking der backteriën. Amsterdam, Netherlands: Jaarboek van de Koninklijke Akademie voor Wetenschappen.
Bender H., Lehmann J., Wallenfels K. 1959. Pullulan, ein extracelluläres Glucan von Pullularia pullulans. Biochimica et Biophysica Acta. 36: 309-316.
Bewley R.J.F. & Campbell R. 1978. Scanning electron microscopy of oak leaves contaminated with heavy metals. Transactions of the British Mycological Society. 71: 508-511.
Bewley R.J.F. & Campbell R. 1980. Influence of zinc, lead and cadmium pollutants on the microflora of hawthorn leaves. Microbial Ecology. 6: 227-240.
Bills G.F., Mene´ndez V.G., Platas G. 2012. Kabatiella bupleuri sp. nov. (Dothideales), a pleomorphic epiphyte and endophyte of the Mediterranean plant Bupleurum gibraltarium (Apiaceae). Mycologia. 104: 962-973.
Bischoff K.M., Leathers T.D., Price N.P.J., Manitchotpisit P. 2015. Liamocin oil from Aureobasidium pullulans has antibacterial activity with specificity for species of Streptococcus. The Journal of Antibiotics. 68: 642-645.
Boekhout T., Fell J.W., O'Donnell K. 1995. Molecular systematics of some yeast-like anamorphs belonging to the Ustilaginales and Tilletiales. Studies in Mycology. 38: 175-183.
Bolignano G., Criseo G. 2003. Disseminated Nosocomial Fungal Infection by Aureobasidium pullulans var. melanigenum: a Case Report. Journal of Clinical Microbiology. 41: 4483-4485.
Crous P.W., Summerell B.A., Swart L., Denman S., Taylor J.E., Bezuidenhout C.M., Palm M.E., Marincowitz S., Groenewald J.Z. 2011. Fungal pathogens of Proteaceae. Persoonia. 27: 20-45.
Campion D.C., Dugan J.P., Piotrowski C.C., Evans A.G. 2002. Direct geo-referencing techniques for rapid positioning of targets and environmental products using tactical grade airborne imaging data. Conference paper. 3: 1603-1608.
Carbone I., Kohn L.M. 1999. A Method for Designing Primer Sets for Speciation Studies in Filamentous Ascomycetes. Mycological Society of America. 91: 553-556.
Chang C.L., Kim D.S., Park D.J., Kim H.J., Lee C.H., Shin J.H. 2000. Acute cerebral phaeohyphomycosis due to Wangiella dermatitidis accompanied by cerebrospinal fluid eosinophilia. Journal of Clinical Microbiology. 38: 1965-1966.
Chan G.F., Puad M.S., Chin C.F., Rashid N.A. 2011. Emergence of Aureobasidium pullulans as human fungal pathogen and molecular assay for futuremedical diagnosis. Folia Microbiologica. 56: 459-467.
Cheng K.C., Demirci A., Catchmark J.M. 2011. Pullulan: biosynthesis, production, and applications. Applied Microbiology and Biotechnology. 92: 29-44.
Chi Z., Wang F., Chi Z., Yue L., Liu G., Zhang T. 2009. Bioproducts from Aureobasidium pullulans, a biotechnologically important yeast. Applied Microbiology and Biotechnology. 82: 793- 804.
Chi Z.M., Yan K.R., Gao L. M., Li J., Wang X.H., Wang L. 2008. Diversity of marine yeasts with high protein content and evaluation of their nutritive compositions. Journal of the Marine Biological Association of the UK, 88: 1-6.
Chu H.Y., Wang Y.F., Shi Y., Lyu X.T., Zhu Y.G., Han X.G. 2017. Current Status and Development Trend of Soil Microbial Biogeography. Bulletin of Chinese Academy of Sciences. 32: 585-592.
Childers S.R. 1991. Opioid receptor-coupled second messengers. Life Sciences. 48: 1991-2003.
Clancy C.J., Nguyen M.H. 2013. Finding the “Missing 50%” of Invasive Candidiasis: How Nonculture Diagnostics Will Improve Understanding of Disease Spectrum and Transform Patient Care. Clinical Infectious Diseases. 56: 1284-1292.
Cooke W.B. 1959. An Ecological Life History of Aureobasidium pullulans (de Bary) Arnaud. Mycopathologia. 12: 1-45.
Cooke W.B. 1962. A taxonomic study in the "black yeasts". Mycopathologia. 17: 1-43.
Dadachova E., Casadevall A. 2008. Ionizing radiation: how fungi cope, adapt, and exploit with the help of melanin. Current Opinion in Microbiology. 11: 525-531.
de Bary A. 1866. Morphologie und Physiologie Pilze, Flechten, und myxomyceten. Hofmeister’s Handbook of Physiological Botany. 2: 188-189.
Ismé A.H., 1923. On dematium pullulans de Bary. Transactions of the British Mycological Society. 9: 100-107.
Domsh K.H., Gaams W., Anderson T.H. 1980. Compendium of Soil Fungi. London, United Kingdom: Academic Press.
Doshida J., Hasegawa H., Onuki H., Shimidzu N. 1996. Exophilin A, a new antibiotic from a marine microorganism Exophiala pisciphila. The Journal of Antibiotics. 49: 1105-1109.
Dvořák P., Hašler P., Poulíčková A. 2012. Phylogeography of the Microcoleus vaginatus (Cyanobacteria) from Three Continents - A Spatial and Temporal Characterization. PLoS ONE. 7: e40153.
Durrell L.W. 1967. Studies of Aureobasidium pullulans (de Bary) Arnaud. Mycopathologia et mycologia applicata. 35: 113-120.
Endo M., Takesako K., Kato I., Yamaguchi H. 1997. Fungicidal Action of Aureobasidin A, a Cyclic Depsipeptide Antifungal Antibiotic, against Saccharomyces cerevisiae. Antimicrobial Agents and Chemotherapy. 41: 672-676.
Excoffier L., Smouse P.E. 1994. Using allele frequencies and geographic subdivision to reconstruct gene trees within a species: molecular variance parsimony. Genetics. 136: 343-359.
Felsenstein J. 1985. The American Naturalist. Phylogenies and the Comparative Method. 125: 1-15.
Fletcher H., Williams N.P., Nicholson A., Rainford L., Phillip H., East-Innis A. 2000. Systemic phaeohyphomycosis in pregnancy and the puerperium. West Indian Medical Journal. 49: 79-82.
Fu Y.X., Li W.H. 1993. Statistical Tests of Neutrality of Mutations. Genetics Society of America. 133: 693-709.
Futuyma D. J. 1986. Evolutionary Biology 2nd edition. Sunderland, Massachusetts, United States: Sinauer Associates Inc.
Gadd G.M. 1981. Mechanisms implicated in the ecological success of polymorphic fungi in metalpolluted habitats. Environmental Technology Letters. 2: 531-536.
Gadd G.M. 1983. Use of solid medium to study effects of cadmium, copper and zinc on yeasts and yeast-like fungi : applicability and limitations. Journal of Applied Bacteriology. 54: 57-62.
Gaur R., Singh R., Gupta M., Gaur M.K. 2010. Aureobasidium pullulans, an economically important polymorphic yeast with special reference to pullulan. African Journal of Biotechnology. 9: 7989-7997.
Glass N.L., Donaldson G.C. 1995. Development of primer sets designed for use with the PCR to amplify conserved genes from filamentous ascomycetes. Applied and Environmental Microbiology. 61: 1323-1330.
Gostincar C., Grube M., de Hoog S., Zalar P., Gunde-Cimerman N. 2010. Extremotolerance in fungi: evolution on the edge. FEMS Microbiology Ecology. 71: 2-11.
Gostinčar C., Grube M., Gunde-Cimerman N. 2011. Evolution of fungal pathogens in domestic environments? Fungal Biology. 115: 1008-1018.
Gostinčar C., Ohm R.A., Kogej T., Sonjak S., Turk M., Zajc J., Zalar P., Grube M., Sun H., Han J., Sharma A., Chiniquy J., Ngan C.Y., Lipzen A., Barry K., Grigoriev I.V., Gunde-Cimerman N. 2014. Genome sequencing of four Aureobasidium pullulans varieties: biotechnological potential, stress tolerance, and description of new species. BMC Genomics. 15: 549.
Gunde-Cimerman N., Zalar P., de Hoog G.S., Plemenitasd A., 2000. Hypersaline water in salterns-natural ecological niches for halophilic black yeasts. FEMS Microbiology Ecology. 32: 235-240.
Gupta V., Chawla R., Sen S. 2001. Aureobasidium pullulans scleritis following keratoplasty: a case report. Ophthalmic surgery and lasers. 32: 481-482.
Hawkes M., Rennie R., Sand C., Vaudry W. 2005. Aureobasidium pullulans infection: fungemia in an infant and a review of human cases. Diagnostic Microbiology and Infectious Disease. 51: 209-213.
Hermanides-Nijhof E.J. 1977a. Aureobasidium and allied genera. Studies in Mycology. 15: 141-177.
Hermanides-Nijhof E.J. 1977b. Aureobasidium and allied genera. Studies in Mycology. 15: 141-222.
Hillis D.M., Bull J.J. 1993. An Empirical Test of Bootstrapping as a Method for Assessing Confidence in Phylogenetic Analysis. Systematic Biology. 42: 182-192.
Hogan L.H., Klein B.S., Levitz S.M. 1996. Virulence factors of medically important fungi. Clinical Microbiology Reviews. 9: 469-488.
Horner-Devine M. C., Carney K. M., Bohannan B. J. M. 2004. An ecological perspective on bacterial biodiversity. Proceedings of the Royal Society B: Biological Sciences. 271: 113-122.
Hortová B., Novotný D. 2011. Endophytic fungi in branches of sour cherry trees: a preliminary study. Czech Mycology. 63: 77-82.
Hu S.Y., Liu S., Wang S.J., Jiao Y.L., Llai J.L. Gu Z.H., Fang Y.W. 2017. Isolation and Identification of a Melanin-producing Marine Fungi and Characterization of the Pigment. Biotechnology Bulletin. 33: 138-143.
Humphries Z., Seifert K.A., Hirooka Y., Visagie M. 2017. A new family and genus in Dothideales for Aureobasidium-like species isolated from house dust. IMA Fungus. 8: 299-315.
Ikai K., Takesako K., Shiomi K., Moriguchi M., Umeda Y., Yamamoto J., Kato I., Naganawa H. 1991. Structure of aureobasidin A. The Journal of Antibiotics. 44: 925-33.
Ito H., Iizuka H., Sato T. 1974. A new radio-resistant yeast of Trichosporon oryzae nov. sp. isolated from rice. Agricultural Biology and Chemistry. 38: 1597-1602.
Kim J.S., Lee I.K., Yun B.S. 2015. A novel biosurfactant produced by Aureobasidium pullulans L3-GPY from a tiger lily wild flower, Lilium lancifolium Thunb. PLoS ONE. 10: e0122917.
Kimura M. 1968. Evolutionary rate at the Molecular Level. Nature. 217: 624-626.
Krochta J.M., de Mulder-Johnston C. 1997. Edible and biodegradable polymer films: challenges and opportunities. Chicago, Illinois, United States: Institute of Food Technologists.
Kurtzman C., Fell J.W. 2011. The Yeasts 5th Edition. Amsterdam, Netherlands: Elsevier.
Kutleša M, Mlinarić-Missoni E, Hatvani L, Voncina D, Simon S, Lepur D, Baršić B. 2012.
Chronic fungal meningitis caused by Aureobasidium proteae. Diagnostic Microbiology and Infectious Disease 73: 271-272.
Lachance M.A., Starmer W.T., Rosa C.A., Bowles J.M., Barker J.S.F., Janzen D.H. 2001.
Biogeography of the yeasts of ephemeral flowers and their insects. FEMS Yeast Research. 1: 1-8.
Lau M.C.Y., Cameron C., Magnabosco C., Brown C.T., Schilkey F., Grim S., Hendrickson S., Pullin M., Lollar B. S., van Heerden E., Kieft T.L., Onstott T.C. 2014. Phylogeny and phylogeography of functional genes shared among seven terrestrial subsurface metagenomes reveal N-cycling and microbial evolutionary relationships. Front Microbiol. 5: 531.
Leathers T.D. 2003. Biotechnological production and applications of pullulan. Applied Microbiology and Biotechnology. 62: 468-473.
Leite R.S., Bocchini D.A., Martins Eda S., Silva D., Gomes E., da Silva R. 2007. Production of cellulolytic and hemicellulolytic enzymes from Aureobasidium pulluans on solid state fermentation. Appl Biochem Biotechnol. 137-140: 281-288.
Librado P., Rozas J. 2009. DnaSP v5: a software for comprehensive analysis of DNA polymorphism data. Bioinformatics. 25: 1451-1452.
Li B.X., Li Y. 2008. Yeast like fungi producing melanin. Institute of Microbiology. 35: 1791-1796.
Lillie R.D., Fulmer H.M. 1976. Histopathologic technic and practical histochemistry. New York, United States: Mc Graw-Hill Book Co.
Loncaric I., Donat C., Antlinger B., Oberlerchner J.T., Heissenberger B., Moosbeckhofer R. 2008. Strain-specific detection of two Aureobasidium pullulans strains, fungal biocontrol agents of fire blight by new, developed multiplex-PCR. Journal of Applied Microbiology. 104:
1433-1441.
Lotrakul P., Deenarn P., Prasongsuk S., Punnapayak H. 2009. Isolation of Aureobasidium pullulans from bathroom surfaces and their antifungal activity against some Aspergilli. African Journal of Microbiology Research. 3: 253-257.
Ma Z.C., Chi Z., Geng Q., Zhang F., Chi Z.M. 2012. Disruption of the pullulansynthetase gene in siderophore-producing Aureobasidium pullulans enhances siderophore production and simplifies siderophore extraction. Process biochemistry. 47: 1807-1812.
Maciel N.O., Piló F.B., Freitas L.F., Gomes F.C., Johann S., Nardi R.M., Lachance M.A., Rosa C.A. 2013. The diversity and antifungal
susceptibility of the yeasts isolated from coconut water and reconstituted fruit juices in Brazil. International Journal of Food Microbiology. 160: 201-205.
Martin R.C., Dombrowski J.E. 2015. Isolation and Identification of Fungal Endophytes from Grasses along the Oregon Coast. American Journal of Plant Sciences. 6: 15.
Martini M., Musetti R., Grisan S., Polizzotto R., Borselli S., Pavan F., Osler R. 2009. DNA-Dependent Detection of the Grapevine Fungal Endophytes Aureobasidium pullulans and Epicoccum nigrum. Plant Disease Journal. 93: 993-998.
Matsheka M.I., Lastovica A.J., Zappe H., Elisha B.G. 2006. The use of (GTG)5 oligonucleotide as an RAPD primer to type Campylobacter concisus. Letters in Applied Microbiology. 42: 600-605.
Meneses D.P., Gudiña E.J., Fernandes F., Gonçalves L.R.B., Rodrigues L.R., Rodrigues S. 2017. The yeast-like fungus Aureobasidium thailandense LB01 produces a new biosurfactant using olive oil mill wastewater as an inducer. Microbiological Research. 204: 40-47.
Merín M.G., Martín M.C., Rantsiou K., Cocolin L., de Ambrosini V.I. M. 2015. Characterization of pectinase activity for enology from yeasts occurring in Argentine Bonarda grape. Brazilian Journal of Microbiology. 46: 815-823.
Mershon-Shier K.L., Deville J.G., Delair S., Fothergill A.W., Wickes B., de Hoog G.S., Sutton D.A., Lewinski M.A. 2011. Aureobasidium pullulans var. melanigenum fungemia in a pediatric patient. Medical Mycology. 49: 80-83.
Morais O.O., Porto C., Coutinho A.S., Reis C.M., Teixeira Mde M., Gomes C.M. 2011. Infection of the lymphatic system by Aureobasidium pullulans in a patient with erythema nodosum leprosum. Brazilian Journal of Infectious Diseases. 15: 288-292.
Moritz C., Dowling T.E., Brown W.M. 1987. Evolution of Animal Mitochondrial DNA: Relevance for Population Biology and Systematics. Annual Review of Ecology and Systematics. 18: 269-292.
Mullis K.B., Faloona F.A. 1987. Specific synthesis of DNA in vitro via a polymerase catalysed chain reaction. Methods in Enzymology. 155: 335-350.
Nasr S., Mohammadimehr M., Vaghei M.G., Amoozegar M.A., Fazeli S.A.S. 2018. Aureobasidium mangrovei sp. nov., an ascomycetous species recovered from Hara protected forests in the Persian Gulf, Iran. Antonie van Leeuwenhoek. 1-9
Nantawanit N., Chanchaichaovivat A., Panijpan B., Ruenwongsa P. 2010. Induction of defense response against colletotrichum capsici in chili fruit by the yeast pichia guilliermondii strain R13. Biological control. 52: 145-142.
Nei M., Tajima F., Tateno Y. 1983. Accuracy of estimated phylogenetic trees from molecular data. II. Gene frequency data. Journal of Molecular Evolution. 19: 153-170.
Nosanchuk J.D., Casadevall A. 2003. The contribution of melanin to microbial pathogenesis. Cellular Microbiology. 5: 203-223.
Olstorpe M., Schnurer J., Passoth V. 2010. Microbial changes during storage of moist crimped cereal barley grain under Swedish farm conditions. Animal Feed Science and Technology. 156: 37-46.
Onofri S. 1999. Enigmatic Microorganisms and Life in Extreme Environments. Academic, Netherlands: Springer.
Peterson S.W., Manitchotpisit P., Leathers T.D. 2013. Aureobasidium thailandense sp. nov. isolated from leaves and wooden surfaces. Systematic and Evolutionary Microbiology. 63: 790-795.
Petri M.G., König J., Moecke H.P., Gramm H.J., Barkow H., Kujath P., Dennhart R., Schäfer H., Meyer N., Kalmar P., Thülig P., Müller J., Lode H. 1997. Epidemiology of invasive mycosis in ICU patients: a prospective multicenter study in 435 non-neutropenic patients. Intensive Care Medicine. 23: 317-325.
Price N.P., Manitchotpisit P., Vermillion K.E., Bowman M.J., Leathers T.D. 2013. Structural characterization of novel extracellular liamocins (mannitol oils) produced by Aureobasidium pullulans strain NRRL 50380. Carbohydrate Research. 370: 24-32.
Ponnuswamy K., Muthureddy Y., Sigamani K. 2014. Two Cases of Multiple Subcutaneous Cystic Phaeohyphomycosis in Immunocompromised Patients with a Rare Causative Organism. Indian Journal of Dermatology. 59: 421.
Powell J.R., Zuniga M.C. 1983. A simplified procedure for studying mtDNA polymorphisms. Biochem. Genet. 21: 1051-1055.
Ranta H.M. 1990. Effect of simulated acid rain on quantity of epiphytic microfungi on Scots pine (Pinus sylvestris L.) needles. Environmental Pollution. 67: 349-359.
Ravella S.R., Quinones T.S., Retter A., Heiermann M., Amon T., Hobbs P.J. 2010. Extracellular polysaccharide (EPS) production by a novel strain of yeast-like fungus Aureobasidium pullulans. Carbohydrate Polymers. 82: 728-732.
Rekha M.R., Sharma C.P. 2007. Pullulan as a promising biomaterial for biomedical applications: a perspective. Trends in Biomaterials and Artificial Organs. 20: 116-121.
Revankar S. G. 2004. Dematiaceous fungi. Seminar in Respiratory and Critical Care Medicine. 25: 183-190.
Riley P.A. 1997. Melanin. International Journal of Biochemistry & Cell Biology. 29: 1235.
Rinaldi M.G. 1996. Phaeohyphomycosis. Dermatologic Clinics. 14: 147-153.
Riquelme M. 1996. Fungal siderophores in plant–microbe interactions. Microbiology Society Journals. SEM. 12: 537-546.
Saitou N., Nei M. 1987. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Molecular Biology and Evolution. 4: 406-425.
Salkin I.F., Gordon M.A., Stone W.B. 1976. Cutaneous infection of a porcupine (Erethizon dorsatum) by Aureobasidium pullulans. Sabouraudia. 14: 47-49.
Salkin I.F., Martinez J.A., Kemna M. E., 1986. Opportunistic infection of the spleen caused by Aureobasidium pullulans. Journal of Clinical Microbiology. 23: 828-831.
Samson R.A., Hoekstra E.S., Frisvad J.C. 2004. Introduction to Food and Air borne Fungi. Utrecht, Netherlands: Centraalbureau voor Schimmelcultures.
Schoch C.L., Shoemaker R.A., Seifert K.A., Hambleton S., Spatafora J.W., Crous P.W. 2006. A multigene phylogeny of the Dothideomycetes using four nuclear loci. Mycologia. 98: 1041-1052.
Seeliger H.P.R. 1956. Use of a urease test for the screening and identification of Cryptococci, Journal of Bacteriology. 72: 127-131.
Sharma N.L., Mahajan V., Sharma R.C., Sharma A. 2002. Subcutaneous pheohyphomycosis in India a case report and review. International Journal of Dermatology. 41: 16-20.
Sharma R.R., Singh D., Singh R. 2009. Biological control of postharvest diseases of fruits and vegetables by microbial antagonists: A review. Biological Control. 50: 205-221.
Shibata M., Asahina M., Teramoto R., Yosomiya R. 2001. Chemical modifications of pullulan by isocyanaye compounds. Polymer Journal. 42: 59-64.
Shiomi N., Yasuda T., Inoue Y., Kusumoto N., Iwasaki S., Katsuda T., Katoh S. 2004. Characteristics of neutralization of acids by newly isolated fungal cells. Journal of Bioscience and Bioengineering. 97: 54-58.
Sides E.H., Benson J.D., Padhye A.A. 1991. Phaeohyphomycotic brain abscess due to Ochroconis gallopavum in a patient with malignant lymphoma of a large cell type. Journal of Medical and Veterinary Mycology. 29: 317-322.
Singh R., Vadlani P.V., Harrison M.L., Bennett G.N., San K.Y. 2008. Aerobic production of isoamyl acetate by overexpression of the yeast alcohol acetyl-transferases AFT1 and AFT2 in Escherichia coli and using low-cost fermentation ingredients. Bioprocess and Biosystems
Engineering. 31: 299-306.
Singh R.S., Saini G.K., Kennedy J.F. 2008. Pullulan: microbial sources, production and applications. Carbohydrate Polymers. 73: 515-531.
Smith W.H. 1977. Influence of heavy metal leaf contaminants on the in vitro growth of urban tree phylloplane fungi. Microbial Ecology. 3: 231-239.
Sutton D.A., Slifkin M., Yakulis R., Rinaldi M.G. 1998. U.S. case report of cerebral phaeohyphomycosis caused by Ramichloridium obovoideum (R. mackenziei): criteria for identification, therapy, and review of other known dematiaceous neurotropic taxa. Journal of Clinical Microbiology. 36: 708-715.
Tajima F. 1989. Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics. 123: 585-595.
Takesako K., Ikai K., Haruna F., Endo M., Shimanaka K., Sono E., Nakamura T., Kato I., Yamaguchi H. 1991. Aureobasidins, new antifungal antibiotics. Taxonomy, fermentation, isolation , and properties. The journal of antibiotics. 44: 919-924.
Takesako K., Kuroda H., Inoue T., Haruna F., Yoshikawa Y., Kato I., Uchida K., Hiratani T., Yamaguchi H. 1993. Biological properties of aureobasidin A, a cyclic depsipeptide antifungal antibiotics. The journal of antibiotics. 46: 1414-1420.
Tamura K., Stecher G., Peterson D., Filipski A., Kumar S. 2013. MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0. Molecular Biology and Evolution. 30: 2725-2729.
Taylor J.E., Crous P.W. 2000. Fungi occurring on Proteaceae: new anamorphs for Teratosphaeria, Mycosphaerella and Lembosia, and other fungi associated with leaf spots and cankers of Proteaceous hosts. Mycological Research. 104: 618-636.
Templeton A. 1998. Nested clade analyses of phylogeographic data: testing hypotheses about gene flow and population history. Molecular Ecology. 7: 381-397.
Templeton A.R., Routman E., Phillips C.A. 1995. Separating population structure from population history: a cladistic analysis of the geographical distribution of mitochondrial DNA haplotypes in the tiger salamander, Ambystoma tigrinum. Genetics. 140: 767-782.
Thambugala K.M., Ariyawansa H.A., Li Y.M., Boonmee S., Hongsanan S., Tian Q., Singtripop C., Bhat D.J., Camporesi E., Jayawardena R., Liu Z.Y., Xu J.C., Chukeatirote E., Hyde K.D. 2014. Dothideales. Fungal Diversity. 68: 105-158.
Thompson J.D., Gibson T.J., Plewniak F., Jeanmougin F., Higgins D.G. 1997. The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Research. 25: 4876-82.
Tintelnot K., de Hoog G.S., Thomas E., Steudel W.I., Huebner K., Seeliger H.P. 1991. Cerebral phaeohyphomycosis caused by an Exophiala species. Mycoses. 34: 239-344.
Toledo A. V., Franco M. E. E., Lopez S. M. Y., Troncozo M. I., Saparrat M. C. N., Balatti P. A. 2017. Melanins in fungi: Types, localization and putative biological roles. Physiological and Molecular Plant Pathology. 99: 2-6.
Urzì C., De Leo F., Lo Passo C., Criseo G. 1999. Intra-specific diversity of Aureobasidium pullulans strains isolated from rocks and other habitats assessed by physiological methods and by random amplified polymorphic DNA (RAPD). Journal of Microbiological Methods. 36: 95-105.
Viala P., Boyer G. 1891. Sur un Basidiomycète inferérieur, parasite des grains de raisins. Comptes Rendues Hebdomaires des Séances de l’Académie de Sciences, Paris, 112: 1148-1150.
Vos P., Hogers R., Bleeker M., Reijans M., van de Lee T., Hornes M., Frijters A., Pot J., Peleman J., Kuiper M. 1995. AFLP: a new technique for DNA fingerprinting. Nucleic Acids Research. 23: 4407-4414.
Vukmir R.B., Kusne S., Linden P., Pasculle W., Fothergill A.W., Sheaffer J., Nieto J., Segal R., Merhav., Martinez A.J., Rinaldi M.G. 1994. Successful therapy for cerebral phaeohyphomycosis due to Dactylaria gallopava in a liver transplant recipient. Clinical Infectious Diseases. 19: 714-719.
Wang C.L., Li Y., Xin F.H., Liu Y.Y., Chi Z.M. 2014. Evaluation of single cell oil from Aureobasidium pullulans var. melanogenum P10 isolated from mangrove ecosystems for biodiesel production. Process Biochemistry. 49: 725-731.
Wang W.L., Chi Z.M., Chi Z., Li J., Wang X.H. 2009. Siderophore production by the marine-derived Aureobasidium pullulans and its antimicrobial activity. Bioresource Technology. 100: 2639-2641.
Welsh J., McClelland M. 1990. Fingerprinting genomes use PCR with arbitrary primer. Nucleic Acids Research. 18: 7213-7218.
White T.J. 1990. Amplification and direct sequencing of fungal ribosomal RNA genes for phylognetics. Orlando, Florida: Academic Press. Williams J.G.K., Kubelik A.R., Livak K.J., Rafalski J.A., Tingey S.V. 1990. DNA polymorphisms amplified by arbitrary primer are useful as genetic markers. Nucleic Acids Research. 22: 6531-6535.
Yurlova N.A., de Hoog G.S. 1997. A new variety of Aureobasidium pullulans characterized by exopolysaccharide structure, nutritional physiology and molecular features. Antonie van Leeuwenhoek. 72: 141-147.
Zalar P., Gostinčar C. , de Hoog G.S., Uršič V., Sudhadham M., Gunde-Cimerman N. 2008. Redefinition of Aureobasidium pullulans and its varieties. Studies in Mycology. 61: 21-38.
Zhang D., Spadaro D., Valente S., Garibaldi A., Gullino M.L. 2012. Cloning, characterization, expression and antifungal activity of an alkaline serine protease of Aureobasidium pullulans PL5 involved in the biological control of postharvest pathogens. International Journal of Food Microbiology. 153: 453-564.
Zhang Z.D., Xie Y.Q., Wang W., Gu M.Y., Zhu J., Tang Q.Y., Song S.Q., Shi Y.H. 2012. Isolation and character of radio-resistant black yeast-like fungus. Institute Of Microbiology ChineseAcademy of Sciences. 39: 724-731.
Zhou N.Y. 2012. Radioresistant melanin-producing yeast-like fungi. Institute Of Microbiology Chinese Academy of Sciences. 39: 722-723.
Zou Y., Hu W.Z., Ma K., Tian M.X. 2015. Physicochemical properties and antioxidant activities of melanin and fractions from Auricularia auricula fruiting bodies. Food Science and Biotechnology. 24: 15-21.
Zou X., Zhou Y., Yang S. T. 2013. Production of polymalic acid and malic acid by Aureobasidium pullulans fermentation and acid hydrolysis. Biotechnology and Bioengineering. 110: 2105-2113.

簡易檢索 / 詳目顯示

相關論文